PKN2 Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with PKN2 Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with PKN2 Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with PKN2 Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with PKN2 Up.

Results found

Linked to

	Label	Description
	ZC3H13 Gene (Entity type)	ENSG00000123200 - zinc finger CCCH-type containing 13
	C4BPB Gene (Entity type)	ENSG00000123843 - complement component 4 binding protein beta
	ENTPD3 Gene (Entity type)	ENSG00000168032 - ectonucleoside triphosphate diphosphohydrolase 3
	APOBEC3A Gene (Entity type)	ENSG00000128383 - apolipoprotein B mRNA editing enzyme catalytic subunit 3A
	IER3IP1 Gene (Entity type)	ENSG00000134049 - immediate early response 3 interacting protein 1
	ARIH1 Gene (Entity type)	ENSG00000166233 - ariadne RBR E3 ubiquitin protein ligase 1
	CPB2 Gene (Entity type)	ENSG00000080618 - carboxypeptidase B2
	SAA4 Gene (Entity type)	ENSG00000148965 - serum amyloid A4, constitutive
	ZNF516 Gene (Entity type)	ENSG00000101493 - zinc finger protein 516
	F7 Gene (Entity type)	ENSG00000057593 - coagulation factor VII

ZC3H13

Gene (Entity type)

ENSG00000123200 - zinc finger CCCH-type containing 13

C4BPB

Gene (Entity type)

ENSG00000123843 - complement component 4 binding protein beta

ENTPD3

Gene (Entity type)

ENSG00000168032 - ectonucleoside triphosphate diphosphohydrolase 3

APOBEC3A

Gene (Entity type)

ENSG00000128383 - apolipoprotein B mRNA editing enzyme catalytic subunit 3A

IER3IP1

Gene (Entity type)

ENSG00000134049 - immediate early response 3 interacting protein 1

ARIH1

Gene (Entity type)

ENSG00000166233 - ariadne RBR E3 ubiquitin protein ligase 1

CPB2

Gene (Entity type)

ENSG00000080618 - carboxypeptidase B2

SAA4

Gene (Entity type)

ENSG00000148965 - serum amyloid A4, constitutive

ZNF516

Gene (Entity type)

ENSG00000101493 - zinc finger protein 516

Gene (Entity type)

ENSG00000057593 - coagulation factor VII

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.