JDP2 Down (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with JDP2 Down.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with JDP2 Down.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with JDP2 Down.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with JDP2 Down.

Results found

Linked to

	Label	Description
	PLOD3 Gene (Entity type)	ENSG00000106397 - procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
	TNFSF9 Gene (Entity type)	ENSG00000125657 - TNF superfamily member 9
	VPREB1 Gene (Entity type)	ENSG00000169575 - V-set pre-B cell surrogate light chain 1
	ARF1 Gene (Entity type)	ENSG00000143761 - ARF GTPase 1
	APBB1IP Gene (Entity type)	ENSG00000077420 - amyloid beta precursor protein binding family B member 1 interacting protein
	CSNK1D Gene (Entity type)	ENSG00000141551 - casein kinase 1 delta
	NRXN2 Gene (Entity type)	ENSG00000110076 - neurexin 2
	MAPKBP1 Gene (Entity type)	ENSG00000137802 - mitogen-activated protein kinase binding protein 1
	CYTH4 Gene (Entity type)	ENSG00000100055 - cytohesin 4
	GNMT Gene (Entity type)	ENSG00000124713 - glycine N-methyltransferase

PLOD3

Gene (Entity type)

ENSG00000106397 - procollagen-lysine,2-oxoglutarate 5-dioxygenase 3

TNFSF9

Gene (Entity type)

ENSG00000125657 - TNF superfamily member 9

VPREB1

Gene (Entity type)

ENSG00000169575 - V-set pre-B cell surrogate light chain 1

ARF1

Gene (Entity type)

ENSG00000143761 - ARF GTPase 1

APBB1IP

Gene (Entity type)

ENSG00000077420 - amyloid beta precursor protein binding family B member 1 interacting protein

CSNK1D

Gene (Entity type)

ENSG00000141551 - casein kinase 1 delta

NRXN2

Gene (Entity type)

ENSG00000110076 - neurexin 2

MAPKBP1

Gene (Entity type)

ENSG00000137802 - mitogen-activated protein kinase binding protein 1

CYTH4

Gene (Entity type)

ENSG00000100055 - cytohesin 4

GNMT

Gene (Entity type)

ENSG00000124713 - glycine N-methyltransferase

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.