MARK3 Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with MARK3 Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with MARK3 Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with MARK3 Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with MARK3 Up.

Results found

Linked to

	Label	Description
	PTPN11 Gene (Entity type)	ENSG00000179295 - protein tyrosine phosphatase non-receptor type 11
	KAT6A Gene (Entity type)	ENSG00000083168 - lysine acetyltransferase 6A
	NTRK3 Gene (Entity type)	ENSG00000140538 - neurotrophic receptor tyrosine kinase 3
	PHOX2B Gene (Entity type)	ENSG00000109132 - paired like homeobox 2B
	NOP2 Gene (Entity type)	ENSG00000111641 - NOP2 nucleolar protein
	KCTD20 Gene (Entity type)	ENSG00000112078 - potassium channel tetramerization domain containing 20
	KPNA6 Gene (Entity type)	ENSG00000025800 - karyopherin subunit alpha 6
	AP3D1 Gene (Entity type)	ENSG00000065000 - adaptor related protein complex 3 subunit delta 1
	TMEM214 Gene (Entity type)	ENSG00000119777 - transmembrane protein 214
	USP14 Gene (Entity type)	ENSG00000101557 - ubiquitin specific peptidase 14

PTPN11

Gene (Entity type)

ENSG00000179295 - protein tyrosine phosphatase non-receptor type 11

KAT6A

Gene (Entity type)

ENSG00000083168 - lysine acetyltransferase 6A

NTRK3

Gene (Entity type)

ENSG00000140538 - neurotrophic receptor tyrosine kinase 3

PHOX2B

Gene (Entity type)

ENSG00000109132 - paired like homeobox 2B

NOP2

Gene (Entity type)

ENSG00000111641 - NOP2 nucleolar protein

KCTD20

Gene (Entity type)

ENSG00000112078 - potassium channel tetramerization domain containing 20

KPNA6

Gene (Entity type)

ENSG00000025800 - karyopherin subunit alpha 6

AP3D1

Gene (Entity type)

ENSG00000065000 - adaptor related protein complex 3 subunit delta 1

TMEM214

Gene (Entity type)

ENSG00000119777 - transmembrane protein 214

USP14

Gene (Entity type)

ENSG00000101557 - ubiquitin specific peptidase 14

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.