PPBP Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with PPBP Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with PPBP Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with PPBP Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with PPBP Up.

Results found

Linked to

	Label	Description
	DNAJC3 Gene (Entity type)	ENSG00000102580 - DnaJ heat shock protein family (Hsp40) member C3
	TNK2 Gene (Entity type)	ENSG00000061938 - tyrosine kinase non receptor 2
	SOX2 Gene (Entity type)	ENSG00000181449 - SRY-box transcription factor 2
	CDK5R1 Gene (Entity type)	ENSG00000176749 - cyclin dependent kinase 5 regulatory subunit 1
	TENM4 Gene (Entity type)	ENSG00000149256 - teneurin transmembrane protein 4
	ADD1 Gene (Entity type)	ENSG00000087274 - adducin 1
	TMEM267 Gene (Entity type)	ENSG00000151881 - transmembrane protein 267
	ARAP1 Gene (Entity type)	ENSG00000186635 - ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
	MAPK8IP3 Gene (Entity type)	ENSG00000138834 - mitogen-activated protein kinase 8 interacting protein 3
	ZBED5 Gene (Entity type)	ENSG00000236287 - zinc finger BED-type containing 5

DNAJC3

Gene (Entity type)

ENSG00000102580 - DnaJ heat shock protein family (Hsp40) member C3

TNK2

Gene (Entity type)

ENSG00000061938 - tyrosine kinase non receptor 2

SOX2

Gene (Entity type)

ENSG00000181449 - SRY-box transcription factor 2

CDK5R1

Gene (Entity type)

ENSG00000176749 - cyclin dependent kinase 5 regulatory subunit 1

TENM4

Gene (Entity type)

ENSG00000149256 - teneurin transmembrane protein 4

ADD1

Gene (Entity type)

ENSG00000087274 - adducin 1

TMEM267

Gene (Entity type)

ENSG00000151881 - transmembrane protein 267

ARAP1

Gene (Entity type)

ENSG00000186635 - ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1

MAPK8IP3

Gene (Entity type)

ENSG00000138834 - mitogen-activated protein kinase 8 interacting protein 3

ZBED5

Gene (Entity type)

ENSG00000236287 - zinc finger BED-type containing 5

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.