MCCC2 Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with MCCC2 Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with MCCC2 Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with MCCC2 Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with MCCC2 Up.

Results found

Linked to

	Label	Description
	PTPN11 Gene (Entity type)	ENSG00000179295 - protein tyrosine phosphatase non-receptor type 11
	TRAK1 Gene (Entity type)	ENSG00000182606 - trafficking kinesin protein 1
	ARFGEF1 Gene (Entity type)	ENSG00000066777 - ARF guanine nucleotide exchange factor 1
	CCDC91 Gene (Entity type)	ENSG00000123106 - coiled-coil domain containing 91
	NRXN3 Gene (Entity type)	ENSG00000021645 - neurexin 3
	WNT4 Gene (Entity type)	ENSG00000162552 - Wnt family member 4
	ATP2A1 Gene (Entity type)	ENSG00000196296 - ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1
	UBAP2 Gene (Entity type)	ENSG00000137073 - ubiquitin associated protein 2
	PYGM Gene (Entity type)	ENSG00000068976 - glycogen phosphorylase, muscle associated
	MUC13 Gene (Entity type)	ENSG00000173702 - mucin 13, cell surface associated

PTPN11

Gene (Entity type)

ENSG00000179295 - protein tyrosine phosphatase non-receptor type 11

TRAK1

Gene (Entity type)

ENSG00000182606 - trafficking kinesin protein 1

ARFGEF1

Gene (Entity type)

ENSG00000066777 - ARF guanine nucleotide exchange factor 1

CCDC91

Gene (Entity type)

ENSG00000123106 - coiled-coil domain containing 91

NRXN3

Gene (Entity type)

ENSG00000021645 - neurexin 3

WNT4

Gene (Entity type)

ENSG00000162552 - Wnt family member 4

ATP2A1

Gene (Entity type)

ENSG00000196296 - ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1

UBAP2

Gene (Entity type)

ENSG00000137073 - ubiquitin associated protein 2

PYGM

Gene (Entity type)

ENSG00000068976 - glycogen phosphorylase, muscle associated

MUC13

Gene (Entity type)

ENSG00000173702 - mucin 13, cell surface associated

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.