GSE128255 NDP knockdown stem cell 3 v 2 human up (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE128255_NDP knockdown_stem cell_3_v_2_human_up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE128255_NDP knockdown_stem cell_3_v_2_human_up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE128255_NDP knockdown_stem cell_3_v_2_human_up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE128255_NDP knockdown_stem cell_3_v_2_human_up.

Results found

Linked to

	Label	Description
	PLOD3 Gene (Entity type)	ENSG00000106397 - procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
	GALE Gene (Entity type)	ENSG00000117308 - UDP-galactose-4-epimerase
	PPIA Gene (Entity type)	ENSG00000196262 - peptidylprolyl isomerase A
	FURIN Gene (Entity type)	ENSG00000140564 - furin, paired basic amino acid cleaving enzyme
	RBCK1 Gene (Entity type)	ENSG00000125826 - RANBP2-type and C3HC4-type zinc finger containing 1
	PTGR1 Gene (Entity type)	ENSG00000106853 - prostaglandin reductase 1
	TRAF1 Gene (Entity type)	ENSG00000056558 - TNF receptor associated factor 1
	ARPC1A Gene (Entity type)	ENSG00000241685 - actin related protein 2/3 complex subunit 1A
	TNFRSF14 Gene (Entity type)	ENSG00000157873 - TNF receptor superfamily member 14
	ARF6 Gene (Entity type)	ENSG00000165527 - ARF GTPase 6

PLOD3

Gene (Entity type)

ENSG00000106397 - procollagen-lysine,2-oxoglutarate 5-dioxygenase 3

GALE

Gene (Entity type)

ENSG00000117308 - UDP-galactose-4-epimerase

PPIA

Gene (Entity type)

ENSG00000196262 - peptidylprolyl isomerase A

FURIN

Gene (Entity type)

ENSG00000140564 - furin, paired basic amino acid cleaving enzyme

RBCK1

Gene (Entity type)

ENSG00000125826 - RANBP2-type and C3HC4-type zinc finger containing 1

PTGR1

Gene (Entity type)

ENSG00000106853 - prostaglandin reductase 1

TRAF1

Gene (Entity type)

ENSG00000056558 - TNF receptor associated factor 1

ARPC1A

Gene (Entity type)

ENSG00000241685 - actin related protein 2/3 complex subunit 1A

TNFRSF14

Gene (Entity type)

ENSG00000157873 - TNF receptor superfamily member 14

ARF6

Gene (Entity type)

ENSG00000165527 - ARF GTPase 6

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.