TRIO Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with TRIO Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with TRIO Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with TRIO Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with TRIO Up.

Results found

Linked to

	Label	Description
	PIGB Gene (Entity type)	ENSG00000069943 - phosphatidylinositol glycan anchor biosynthesis class B
	MED1 Gene (Entity type)	ENSG00000125686 - mediator complex subunit 1
	PTBP2 Gene (Entity type)	ENSG00000117569 - polypyrimidine tract binding protein 2
	APOBEC3A Gene (Entity type)	ENSG00000128383 - apolipoprotein B mRNA editing enzyme catalytic subunit 3A
	PBX2 Gene (Entity type)	ENSG00000204304 - PBX homeobox 2
	CD1D Gene (Entity type)	ENSG00000158473 - CD1d molecule
	CD1B Gene (Entity type)	ENSG00000158485 - CD1b molecule
	UBA6 Gene (Entity type)	ENSG00000033178 - ubiquitin like modifier activating enzyme 6
	CLEC4A Gene (Entity type)	ENSG00000111729 - C-type lectin domain family 4 member A
	SPOP Gene (Entity type)	ENSG00000121067 - speckle type BTB/POZ protein

PIGB

Gene (Entity type)

ENSG00000069943 - phosphatidylinositol glycan anchor biosynthesis class B

MED1

Gene (Entity type)

ENSG00000125686 - mediator complex subunit 1

PTBP2

Gene (Entity type)

ENSG00000117569 - polypyrimidine tract binding protein 2

APOBEC3A

Gene (Entity type)

ENSG00000128383 - apolipoprotein B mRNA editing enzyme catalytic subunit 3A

PBX2

Gene (Entity type)

ENSG00000204304 - PBX homeobox 2

CD1D

Gene (Entity type)

ENSG00000158473 - CD1d molecule

CD1B

Gene (Entity type)

ENSG00000158485 - CD1b molecule

UBA6

Gene (Entity type)

ENSG00000033178 - ubiquitin like modifier activating enzyme 6

CLEC4A

Gene (Entity type)

ENSG00000111729 - C-type lectin domain family 4 member A

SPOP

Gene (Entity type)

ENSG00000121067 - speckle type BTB/POZ protein

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.