RAMP3 Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with RAMP3 Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with RAMP3 Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with RAMP3 Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with RAMP3 Up.

Results found

Linked to

	Label	Description
	OGFOD1 Gene (Entity type)	ENSG00000087263 - 2-oxoglutarate and iron dependent oxygenase domain containing 1
	EFEMP2 Gene (Entity type)	ENSG00000172638 - EGF-like fibulin extracellular matrix protein 2
	TMCC1 Gene (Entity type)	ENSG00000172765 - transmembrane and coiled-coil domain family 1
	UBXN7 Gene (Entity type)	ENSG00000163960 - UBX domain protein 7
	POLR3E Gene (Entity type)	ENSG00000058600 - RNA polymerase III subunit E
	NRXN3 Gene (Entity type)	ENSG00000021645 - neurexin 3
	COX4I1 Gene (Entity type)	ENSG00000131143 - cytochrome c oxidase subunit 4I1
	RUFY2 Gene (Entity type)	ENSG00000204130 - RUN and FYVE domain containing 2
	VPREB1 Gene (Entity type)	ENSG00000169575 - V-set pre-B cell surrogate light chain 1
	TAF10 Gene (Entity type)	ENSG00000166337 - TATA-box binding protein associated factor 10

OGFOD1

Gene (Entity type)

ENSG00000087263 - 2-oxoglutarate and iron dependent oxygenase domain containing 1

EFEMP2

Gene (Entity type)

ENSG00000172638 - EGF-like fibulin extracellular matrix protein 2

TMCC1

Gene (Entity type)

ENSG00000172765 - transmembrane and coiled-coil domain family 1

UBXN7

Gene (Entity type)

ENSG00000163960 - UBX domain protein 7

POLR3E

Gene (Entity type)

ENSG00000058600 - RNA polymerase III subunit E

NRXN3

Gene (Entity type)

ENSG00000021645 - neurexin 3

COX4I1

Gene (Entity type)

ENSG00000131143 - cytochrome c oxidase subunit 4I1

RUFY2

Gene (Entity type)

ENSG00000204130 - RUN and FYVE domain containing 2

VPREB1

Gene (Entity type)

ENSG00000169575 - V-set pre-B cell surrogate light chain 1

TAF10

Gene (Entity type)

ENSG00000166337 - TATA-box binding protein associated factor 10

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.