TMF1 Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with TMF1 Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with TMF1 Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with TMF1 Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with TMF1 Up.

Results found

Linked to

	Label	Description
	SNX13 Gene (Entity type)	ENSG00000071189 - sorting nexin 13
	ABHD5 Gene (Entity type)	ENSG00000011198 - abhydrolase domain containing 5, lysophosphatidic acid acyltransferase
	RPS6KB1 Gene (Entity type)	ENSG00000108443 - ribosomal protein S6 kinase B1
	EBI3 Gene (Entity type)	ENSG00000105246 - Epstein-Barr virus induced 3
	SHOC2 Gene (Entity type)	ENSG00000108061 - SHOC2 leucine rich repeat scaffold protein
	SMG7 Gene (Entity type)	ENSG00000116698 - SMG7 nonsense mediated mRNA decay factor
	MTMR4 Gene (Entity type)	ENSG00000108389 - myotubularin related protein 4
	SLC22A5 Gene (Entity type)	ENSG00000197375 - solute carrier family 22 member 5
	RUBCN Gene (Entity type)	ENSG00000145016 - rubicon autophagy regulator
	HDHD5 Gene (Entity type)	ENSG00000069998 - haloacid dehalogenase like hydrolase domain containing 5

SNX13

Gene (Entity type)

ENSG00000071189 - sorting nexin 13

ABHD5

Gene (Entity type)

ENSG00000011198 - abhydrolase domain containing 5, lysophosphatidic acid acyltransferase

RPS6KB1

Gene (Entity type)

ENSG00000108443 - ribosomal protein S6 kinase B1

EBI3

Gene (Entity type)

ENSG00000105246 - Epstein-Barr virus induced 3

SHOC2

Gene (Entity type)

ENSG00000108061 - SHOC2 leucine rich repeat scaffold protein

SMG7

Gene (Entity type)

ENSG00000116698 - SMG7 nonsense mediated mRNA decay factor

MTMR4

Gene (Entity type)

ENSG00000108389 - myotubularin related protein 4

SLC22A5

Gene (Entity type)

ENSG00000197375 - solute carrier family 22 member 5

RUBCN

Gene (Entity type)

ENSG00000145016 - rubicon autophagy regulator

HDHD5

Gene (Entity type)

ENSG00000069998 - haloacid dehalogenase like hydrolase domain containing 5

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.