PNKP Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with PNKP Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with PNKP Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with PNKP Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with PNKP Up.

Results found

Linked to

	Label	Description
	TTC17 Gene (Entity type)	ENSG00000052841 - tetratricopeptide repeat domain 17
	RUNX1T1 Gene (Entity type)	ENSG00000079102 - RUNX1 partner transcriptional co-repressor 1
	PIAS1 Gene (Entity type)	ENSG00000033800 - protein inhibitor of activated STAT 1
	ROPN1B Gene (Entity type)	ENSG00000114547 - rhophilin associated tail protein 1B
	SAA4 Gene (Entity type)	ENSG00000148965 - serum amyloid A4, constitutive
	CASQ2 Gene (Entity type)	ENSG00000118729 - calsequestrin 2
	TMEFF1 Gene (Entity type)	ENSG00000241697 - transmembrane protein with EGF like and two follistatin like domains 1

TTC17

Gene (Entity type)

ENSG00000052841 - tetratricopeptide repeat domain 17

RUNX1T1

Gene (Entity type)

ENSG00000079102 - RUNX1 partner transcriptional co-repressor 1

PIAS1

Gene (Entity type)

ENSG00000033800 - protein inhibitor of activated STAT 1

ROPN1B

Gene (Entity type)

ENSG00000114547 - rhophilin associated tail protein 1B

SAA4

Gene (Entity type)

ENSG00000148965 - serum amyloid A4, constitutive

CASQ2

Gene (Entity type)

ENSG00000118729 - calsequestrin 2

TMEFF1

Gene (Entity type)

ENSG00000241697 - transmembrane protein with EGF like and two follistatin like domains 1

DISPLAY PER PAGE

CFDE Workbench

Consortium

Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.