HDAC9 Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with HDAC9 Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with HDAC9 Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with HDAC9 Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with HDAC9 Up.

Results found

Linked to

	Label	Description
	GSK3B Gene (Entity type)	ENSG00000082701 - glycogen synthase kinase 3 beta
	TM9SF2 Gene (Entity type)	ENSG00000125304 - transmembrane 9 superfamily member 2
	SEC16A Gene (Entity type)	ENSG00000148396 - SEC16 homolog A, endoplasmic reticulum export factor
	GTF2H3 Gene (Entity type)	ENSG00000111358 - general transcription factor IIH subunit 3
	RAD54L Gene (Entity type)	ENSG00000085999 - RAD54 like
	PHIP Gene (Entity type)	ENSG00000146247 - PHIP subunit of CUL4-Ring ligase complex
	LRRC41 Gene (Entity type)	ENSG00000132128 - leucine rich repeat containing 41
	ANKS1A Gene (Entity type)	ENSG00000064999 - ankyrin repeat and sterile alpha motif domain containing 1A
	VPS51 Gene (Entity type)	ENSG00000149823 - VPS51 subunit of GARP complex
	XRCC2 Gene (Entity type)	ENSG00000196584 - X-ray repair cross complementing 2

GSK3B

Gene (Entity type)

ENSG00000082701 - glycogen synthase kinase 3 beta

TM9SF2

Gene (Entity type)

ENSG00000125304 - transmembrane 9 superfamily member 2

SEC16A

Gene (Entity type)

ENSG00000148396 - SEC16 homolog A, endoplasmic reticulum export factor

GTF2H3

Gene (Entity type)

ENSG00000111358 - general transcription factor IIH subunit 3

RAD54L

Gene (Entity type)

ENSG00000085999 - RAD54 like

PHIP

Gene (Entity type)

ENSG00000146247 - PHIP subunit of CUL4-Ring ligase complex

LRRC41

Gene (Entity type)

ENSG00000132128 - leucine rich repeat containing 41

ANKS1A

Gene (Entity type)

ENSG00000064999 - ankyrin repeat and sterile alpha motif domain containing 1A

VPS51

Gene (Entity type)

ENSG00000149823 - VPS51 subunit of GARP complex

XRCC2

Gene (Entity type)

ENSG00000196584 - X-ray repair cross complementing 2

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.