PDXP Down (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with PDXP Down.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with PDXP Down.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with PDXP Down.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with PDXP Down.

Results found

Linked to

	Label	Description
	CHMP2A Gene (Entity type)	ENSG00000130724 - charged multivesicular body protein 2A
	PSMD4 Gene (Entity type)	ENSG00000159352 - proteasome 26S subunit ubiquitin receptor, non-ATPase 4
	EIF3I Gene (Entity type)	ENSG00000084623 - eukaryotic translation initiation factor 3 subunit I
	CLDN5 Gene (Entity type)	ENSG00000184113 - claudin 5
	EIF3G Gene (Entity type)	ENSG00000130811 - eukaryotic translation initiation factor 3 subunit G
	VAMP3 Gene (Entity type)	ENSG00000049245 - vesicle associated membrane protein 3
	VPREB1 Gene (Entity type)	ENSG00000169575 - V-set pre-B cell surrogate light chain 1
	ATP6V1F Gene (Entity type)	ENSG00000128524 - ATPase H+ transporting V1 subunit F
	KCNN3 Gene (Entity type)	ENSG00000143603 - potassium calcium-activated channel subfamily N member 3
	ARPC4 Gene (Entity type)	ENSG00000241553 - actin related protein 2/3 complex subunit 4

CHMP2A

Gene (Entity type)

ENSG00000130724 - charged multivesicular body protein 2A

PSMD4

Gene (Entity type)

ENSG00000159352 - proteasome 26S subunit ubiquitin receptor, non-ATPase 4

EIF3I

Gene (Entity type)

ENSG00000084623 - eukaryotic translation initiation factor 3 subunit I

CLDN5

Gene (Entity type)

ENSG00000184113 - claudin 5

EIF3G

Gene (Entity type)

ENSG00000130811 - eukaryotic translation initiation factor 3 subunit G

VAMP3

Gene (Entity type)

ENSG00000049245 - vesicle associated membrane protein 3

VPREB1

Gene (Entity type)

ENSG00000169575 - V-set pre-B cell surrogate light chain 1

ATP6V1F

Gene (Entity type)

ENSG00000128524 - ATPase H+ transporting V1 subunit F

KCNN3

Gene (Entity type)

ENSG00000143603 - potassium calcium-activated channel subfamily N member 3

ARPC4

Gene (Entity type)

ENSG00000241553 - actin related protein 2/3 complex subunit 4

DISPLAY PER PAGE

CFDE Workbench

Consortium

Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.