SEMA3G Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with SEMA3G Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with SEMA3G Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with SEMA3G Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with SEMA3G Up.

Results found

Linked to

	Label	Description
	ASPA Gene (Entity type)	ENSG00000108381 - aspartoacylase
	USP9X Gene (Entity type)	ENSG00000124486 - ubiquitin specific peptidase 9 X-linked
	TMEM140 Gene (Entity type)	ENSG00000146859 - transmembrane protein 140
	RUNX1T1 Gene (Entity type)	ENSG00000079102 - RUNX1 partner transcriptional co-repressor 1
	RETREG2 Gene (Entity type)	ENSG00000144567 - reticulophagy regulator family member 2
	MICAL3 Gene (Entity type)	ENSG00000243156 - microtubule associated monooxygenase, calponin and LIM domain containing 3
	SENP6 Gene (Entity type)	ENSG00000112701 - SUMO specific peptidase 6
	MGRN1 Gene (Entity type)	ENSG00000102858 - mahogunin ring finger 1
	PDCD6 Gene (Entity type)	ENSG00000249915 - programmed cell death 6
	TAP2 Gene (Entity type)	ENSG00000204267 - transporter 2, ATP binding cassette subfamily B member

ASPA

Gene (Entity type)

ENSG00000108381 - aspartoacylase

USP9X

Gene (Entity type)

ENSG00000124486 - ubiquitin specific peptidase 9 X-linked

TMEM140

Gene (Entity type)

ENSG00000146859 - transmembrane protein 140

RUNX1T1

Gene (Entity type)

ENSG00000079102 - RUNX1 partner transcriptional co-repressor 1

RETREG2

Gene (Entity type)

ENSG00000144567 - reticulophagy regulator family member 2

MICAL3

Gene (Entity type)

ENSG00000243156 - microtubule associated monooxygenase, calponin and LIM domain containing 3

SENP6

Gene (Entity type)

ENSG00000112701 - SUMO specific peptidase 6

MGRN1

Gene (Entity type)

ENSG00000102858 - mahogunin ring finger 1

PDCD6

Gene (Entity type)

ENSG00000249915 - programmed cell death 6

TAP2

Gene (Entity type)

ENSG00000204267 - transporter 2, ATP binding cassette subfamily B member

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.