SPDEF Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with SPDEF Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with SPDEF Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with SPDEF Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with SPDEF Up.

Results found

Linked to

	Label	Description
	IL16 Gene (Entity type)	ENSG00000172349 - interleukin 16
	IGSF6 Gene (Entity type)	ENSG00000140749 - immunoglobulin superfamily member 6
	ENTPD3 Gene (Entity type)	ENSG00000168032 - ectonucleoside triphosphate diphosphohydrolase 3
	LILRA2 Gene (Entity type)	ENSG00000239998 - leukocyte immunoglobulin like receptor A2
	MYO1F Gene (Entity type)	ENSG00000142347 - myosin IF
	PTPN22 Gene (Entity type)	ENSG00000134242 - protein tyrosine phosphatase non-receptor type 22
	ATG101 Gene (Entity type)	ENSG00000123395 - autophagy related 101
	VNN2 Gene (Entity type)	ENSG00000112303 - vanin 2
	FOXJ2 Gene (Entity type)	ENSG00000065970 - forkhead box J2
	ATP5F1D Gene (Entity type)	ENSG00000099624 - ATP synthase F1 subunit delta

IL16

Gene (Entity type)

ENSG00000172349 - interleukin 16

IGSF6

Gene (Entity type)

ENSG00000140749 - immunoglobulin superfamily member 6

ENTPD3

Gene (Entity type)

ENSG00000168032 - ectonucleoside triphosphate diphosphohydrolase 3

LILRA2

Gene (Entity type)

ENSG00000239998 - leukocyte immunoglobulin like receptor A2

MYO1F

Gene (Entity type)

ENSG00000142347 - myosin IF

PTPN22

Gene (Entity type)

ENSG00000134242 - protein tyrosine phosphatase non-receptor type 22

ATG101

Gene (Entity type)

ENSG00000123395 - autophagy related 101

VNN2

Gene (Entity type)

ENSG00000112303 - vanin 2

FOXJ2

Gene (Entity type)

ENSG00000065970 - forkhead box J2

ATP5F1D

Gene (Entity type)

ENSG00000099624 - ATP synthase F1 subunit delta

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.