CDA Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with CDA Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with CDA Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with CDA Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with CDA Up.

Results found

Linked to

	Label	Description
	HDAC6 Gene (Entity type)	ENSG00000094631 - histone deacetylase 6
	ZNF318 Gene (Entity type)	ENSG00000171467 - zinc finger protein 318
	PRMT2 Gene (Entity type)	ENSG00000160310 - protein arginine methyltransferase 2
	RAD54B Gene (Entity type)	ENSG00000197275 - RAD54 homolog B
	SRRM1 Gene (Entity type)	ENSG00000133226 - serine and arginine repetitive matrix 1
	PRKACA Gene (Entity type)	ENSG00000072062 - protein kinase cAMP-activated catalytic subunit alpha
	HOXB5 Gene (Entity type)	ENSG00000120075 - homeobox B5
	MTR Gene (Entity type)	ENSG00000116984 - 5-methyltetrahydrofolate-homocysteine methyltransferase
	LIN28A Gene (Entity type)	ENSG00000131914 - lin-28 RNA binding posttranscriptional regulator A
	SLC35A5 Gene (Entity type)	ENSG00000138459 - solute carrier family 35 member A5

HDAC6

Gene (Entity type)

ENSG00000094631 - histone deacetylase 6

ZNF318

Gene (Entity type)

ENSG00000171467 - zinc finger protein 318

PRMT2

Gene (Entity type)

ENSG00000160310 - protein arginine methyltransferase 2

RAD54B

Gene (Entity type)

ENSG00000197275 - RAD54 homolog B

SRRM1

Gene (Entity type)

ENSG00000133226 - serine and arginine repetitive matrix 1

PRKACA

Gene (Entity type)

ENSG00000072062 - protein kinase cAMP-activated catalytic subunit alpha

HOXB5

Gene (Entity type)

ENSG00000120075 - homeobox B5

MTR

Gene (Entity type)

ENSG00000116984 - 5-methyltetrahydrofolate-homocysteine methyltransferase

LIN28A

Gene (Entity type)

ENSG00000131914 - lin-28 RNA binding posttranscriptional regulator A

SLC35A5

Gene (Entity type)

ENSG00000138459 - solute carrier family 35 member A5

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.