SYNM Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with SYNM Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with SYNM Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with SYNM Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with SYNM Up.

Results found

Linked to

	Label	Description
	ZNF804A Gene (Entity type)	ENSG00000170396 - zinc finger protein 804A
	HS3ST3A1 Gene (Entity type)	ENSG00000153976 - heparan sulfate-glucosamine 3-sulfotransferase 3A1
	UBAP2 Gene (Entity type)	ENSG00000137073 - ubiquitin associated protein 2
	VPS51 Gene (Entity type)	ENSG00000149823 - VPS51 subunit of GARP complex
	SS18 Gene (Entity type)	ENSG00000141380 - SS18 subunit of BAF chromatin remodeling complex
	HIGD2A Gene (Entity type)	ENSG00000146066 - HIG1 hypoxia inducible domain family member 2A
	RPL29 Gene (Entity type)	ENSG00000162244 - ribosomal protein L29
	ARL14 Gene (Entity type)	ENSG00000179674 - ARF like GTPase 14
	MOB4 Gene (Entity type)	ENSG00000115540 - MOB family member 4, phocein
	CYP2C18 Gene (Entity type)	ENSG00000108242 - cytochrome P450 family 2 subfamily C member 18

ZNF804A

Gene (Entity type)

ENSG00000170396 - zinc finger protein 804A

HS3ST3A1

Gene (Entity type)

ENSG00000153976 - heparan sulfate-glucosamine 3-sulfotransferase 3A1

UBAP2

Gene (Entity type)

ENSG00000137073 - ubiquitin associated protein 2

VPS51

Gene (Entity type)

ENSG00000149823 - VPS51 subunit of GARP complex

SS18

Gene (Entity type)

ENSG00000141380 - SS18 subunit of BAF chromatin remodeling complex

HIGD2A

Gene (Entity type)

ENSG00000146066 - HIG1 hypoxia inducible domain family member 2A

RPL29

Gene (Entity type)

ENSG00000162244 - ribosomal protein L29

ARL14

Gene (Entity type)

ENSG00000179674 - ARF like GTPase 14

MOB4

Gene (Entity type)

ENSG00000115540 - MOB family member 4, phocein

CYP2C18

Gene (Entity type)

ENSG00000108242 - cytochrome P450 family 2 subfamily C member 18

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.