GSE57871 GLI1 PSMD13 knockdown HCT 116 Vorinostat 8 v 12 human dn (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_8_v_12_human_dn.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_8_v_12_human_dn.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_8_v_12_human_dn.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_8_v_12_human_dn.

Results found

Linked to

	Label	Description
	SMAD2 Gene (Entity type)	ENSG00000175387 - SMAD family member 2
	PLOD3 Gene (Entity type)	ENSG00000106397 - procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
	SMAD4 Gene (Entity type)	ENSG00000141646 - SMAD family member 4
	DTX3L Gene (Entity type)	ENSG00000163840 - deltex E3 ubiquitin ligase 3L
	ADCY3 Gene (Entity type)	ENSG00000138031 - adenylate cyclase 3
	LPAR2 Gene (Entity type)	ENSG00000064547 - lysophosphatidic acid receptor 2
	UBTF Gene (Entity type)	ENSG00000108312 - upstream binding transcription factor
	DCPS Gene (Entity type)	ENSG00000110063 - decapping enzyme, scavenger
	TDG Gene (Entity type)	ENSG00000139372 - thymine DNA glycosylase
	PLK4 Gene (Entity type)	ENSG00000142731 - polo like kinase 4

SMAD2

Gene (Entity type)

ENSG00000175387 - SMAD family member 2

PLOD3

Gene (Entity type)

ENSG00000106397 - procollagen-lysine,2-oxoglutarate 5-dioxygenase 3

SMAD4

Gene (Entity type)

ENSG00000141646 - SMAD family member 4

DTX3L

Gene (Entity type)

ENSG00000163840 - deltex E3 ubiquitin ligase 3L

ADCY3

Gene (Entity type)

ENSG00000138031 - adenylate cyclase 3

LPAR2

Gene (Entity type)

ENSG00000064547 - lysophosphatidic acid receptor 2

UBTF

Gene (Entity type)

ENSG00000108312 - upstream binding transcription factor

DCPS

Gene (Entity type)

ENSG00000110063 - decapping enzyme, scavenger

TDG

Gene (Entity type)

ENSG00000139372 - thymine DNA glycosylase

PLK4

Gene (Entity type)

ENSG00000142731 - polo like kinase 4

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.