LTK Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with LTK Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with LTK Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with LTK Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with LTK Up.

Results found

Linked to

	Label	Description
	PIGB Gene (Entity type)	ENSG00000069943 - phosphatidylinositol glycan anchor biosynthesis class B
	RASIP1 Gene (Entity type)	ENSG00000105538 - Ras interacting protein 1
	MAP3K4 Gene (Entity type)	ENSG00000085511 - mitogen-activated protein kinase kinase kinase 4
	IVL Gene (Entity type)	ENSG00000163207 - involucrin
	UBXN7 Gene (Entity type)	ENSG00000163960 - UBX domain protein 7
	TGM1 Gene (Entity type)	ENSG00000092295 - transglutaminase 1
	SSR2 Gene (Entity type)	ENSG00000163479 - signal sequence receptor subunit 2
	RAP2C Gene (Entity type)	ENSG00000123728 - RAP2C, member of RAS oncogene family
	UBE2I Gene (Entity type)	ENSG00000103275 - ubiquitin conjugating enzyme E2 I
	SNCG Gene (Entity type)	ENSG00000173267 - synuclein gamma

PIGB

Gene (Entity type)

ENSG00000069943 - phosphatidylinositol glycan anchor biosynthesis class B

RASIP1

Gene (Entity type)

ENSG00000105538 - Ras interacting protein 1

MAP3K4

Gene (Entity type)

ENSG00000085511 - mitogen-activated protein kinase kinase kinase 4

IVL

Gene (Entity type)

ENSG00000163207 - involucrin

UBXN7

Gene (Entity type)

ENSG00000163960 - UBX domain protein 7

TGM1

Gene (Entity type)

ENSG00000092295 - transglutaminase 1

SSR2

Gene (Entity type)

ENSG00000163479 - signal sequence receptor subunit 2

RAP2C

Gene (Entity type)

ENSG00000123728 - RAP2C, member of RAS oncogene family

UBE2I

Gene (Entity type)

ENSG00000103275 - ubiquitin conjugating enzyme E2 I

SNCG

Gene (Entity type)

ENSG00000173267 - synuclein gamma

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.