BMX Down (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with BMX Down.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with BMX Down.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with BMX Down.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with BMX Down.

Results found

Linked to

	Label	Description
	GTF2H3 Gene (Entity type)	ENSG00000111358 - general transcription factor IIH subunit 3
	THOC2 Gene (Entity type)	ENSG00000125676 - THO complex subunit 2
	DIP2A Gene (Entity type)	ENSG00000160305 - DIP2 acetate--CoA ligase A
	BSDC1 Gene (Entity type)	ENSG00000160058 - BSD domain containing 1
	COLGALT2 Gene (Entity type)	ENSG00000198756 - collagen beta(1-O)galactosyltransferase 2
	CST4 Gene (Entity type)	ENSG00000101441 - cystatin S
	KIAA0319L Gene (Entity type)	ENSG00000142687 - KIAA0319 like
	CLN8 Gene (Entity type)	ENSG00000182372 - CLN8 transmembrane ER and ERGIC protein
	ZNF611 Gene (Entity type)	ENSG00000213020 - zinc finger protein 611
	PTK6 Gene (Entity type)	ENSG00000101213 - protein tyrosine kinase 6

GTF2H3

Gene (Entity type)

ENSG00000111358 - general transcription factor IIH subunit 3

THOC2

Gene (Entity type)

ENSG00000125676 - THO complex subunit 2

DIP2A

Gene (Entity type)

ENSG00000160305 - DIP2 acetate--CoA ligase A

BSDC1

Gene (Entity type)

ENSG00000160058 - BSD domain containing 1

COLGALT2

Gene (Entity type)

ENSG00000198756 - collagen beta(1-O)galactosyltransferase 2

CST4

Gene (Entity type)

ENSG00000101441 - cystatin S

KIAA0319L

Gene (Entity type)

ENSG00000142687 - KIAA0319 like

CLN8

Gene (Entity type)

ENSG00000182372 - CLN8 transmembrane ER and ERGIC protein

ZNF611

Gene (Entity type)

ENSG00000213020 - zinc finger protein 611

PTK6

Gene (Entity type)

ENSG00000101213 - protein tyrosine kinase 6

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.