CKM Down (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with CKM Down.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with CKM Down.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with CKM Down.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with CKM Down.

Results found

Linked to

	Label	Description
	GTF2H3 Gene (Entity type)	ENSG00000111358 - general transcription factor IIH subunit 3
	RBM8A Gene (Entity type)	ENSG00000265241 - RNA binding motif protein 8A
	LLGL2 Gene (Entity type)	ENSG00000073350 - LLGL scribble cell polarity complex component 2
	NOX1 Gene (Entity type)	ENSG00000007952 - NADPH oxidase 1
	VIL1 Gene (Entity type)	ENSG00000127831 - villin 1
	MEP1A Gene (Entity type)	ENSG00000112818 - meprin A subunit alpha
	ANKMY2 Gene (Entity type)	ENSG00000106524 - ankyrin repeat and MYND domain containing 2
	LIN28A Gene (Entity type)	ENSG00000131914 - lin-28 RNA binding posttranscriptional regulator A
	PKP3 Gene (Entity type)	ENSG00000184363 - plakophilin 3
	RAPGEFL1 Gene (Entity type)	ENSG00000108352 - Rap guanine nucleotide exchange factor like 1

GTF2H3

Gene (Entity type)

ENSG00000111358 - general transcription factor IIH subunit 3

RBM8A

Gene (Entity type)

ENSG00000265241 - RNA binding motif protein 8A

LLGL2

Gene (Entity type)

ENSG00000073350 - LLGL scribble cell polarity complex component 2

NOX1

Gene (Entity type)

ENSG00000007952 - NADPH oxidase 1

VIL1

Gene (Entity type)

ENSG00000127831 - villin 1

MEP1A

Gene (Entity type)

ENSG00000112818 - meprin A subunit alpha

ANKMY2

Gene (Entity type)

ENSG00000106524 - ankyrin repeat and MYND domain containing 2

LIN28A

Gene (Entity type)

ENSG00000131914 - lin-28 RNA binding posttranscriptional regulator A

PKP3

Gene (Entity type)

ENSG00000184363 - plakophilin 3

RAPGEFL1

Gene (Entity type)

ENSG00000108352 - Rap guanine nucleotide exchange factor like 1

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.