AMT Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with AMT Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with AMT Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with AMT Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with AMT Up.

Results found

Linked to

	Label	Description
	AGO1 Gene (Entity type)	ENSG00000092847 - argonaute RISC component 1
	IFT52 Gene (Entity type)	ENSG00000101052 - intraflagellar transport 52
	TFCP2L1 Gene (Entity type)	ENSG00000115112 - transcription factor CP2 like 1
	UPF3B Gene (Entity type)	ENSG00000125351 - UPF3B regulator of nonsense mediated mRNA decay
	MRS2 Gene (Entity type)	ENSG00000124532 - magnesium transporter MRS2
	DOP1B Gene (Entity type)	ENSG00000142197 - DOP1 leucine zipper like protein B
	PEX3 Gene (Entity type)	ENSG00000034693 - peroxisomal biogenesis factor 3
	CTR9 Gene (Entity type)	ENSG00000198730 - CTR9 component of Paf1/RNA polymerase II complex
	WASHC3 Gene (Entity type)	ENSG00000120860 - WASH complex subunit 3
	GRHL2 Gene (Entity type)	ENSG00000083307 - grainyhead like transcription factor 2

AGO1

Gene (Entity type)

ENSG00000092847 - argonaute RISC component 1

IFT52

Gene (Entity type)

ENSG00000101052 - intraflagellar transport 52

TFCP2L1

Gene (Entity type)

ENSG00000115112 - transcription factor CP2 like 1

UPF3B

Gene (Entity type)

ENSG00000125351 - UPF3B regulator of nonsense mediated mRNA decay

MRS2

Gene (Entity type)

ENSG00000124532 - magnesium transporter MRS2

DOP1B

Gene (Entity type)

ENSG00000142197 - DOP1 leucine zipper like protein B

PEX3

Gene (Entity type)

ENSG00000034693 - peroxisomal biogenesis factor 3

CTR9

Gene (Entity type)

ENSG00000198730 - CTR9 component of Paf1/RNA polymerase II complex

WASHC3

Gene (Entity type)

ENSG00000120860 - WASH complex subunit 3

GRHL2

Gene (Entity type)

ENSG00000083307 - grainyhead like transcription factor 2

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.