STAG2 Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with STAG2 Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with STAG2 Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with STAG2 Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with STAG2 Up.

Results found

Linked to

	Label	Description
	SMC3 Gene (Entity type)	ENSG00000108055 - structural maintenance of chromosomes 3
	ATP8B4 Gene (Entity type)	ENSG00000104043 - ATPase phospholipid transporting 8B4 (putative)
	HPGDS Gene (Entity type)	ENSG00000163106 - hematopoietic prostaglandin D synthase
	SLK Gene (Entity type)	ENSG00000065613 - STE20 like kinase
	CAMLG Gene (Entity type)	ENSG00000164615 - calcium modulating ligand
	BICD2 Gene (Entity type)	ENSG00000185963 - BICD cargo adaptor 2
	INTS13 Gene (Entity type)	ENSG00000064102 - integrator complex subunit 13
	PRPF3 Gene (Entity type)	ENSG00000117360 - pre-mRNA processing factor 3
	VAMP7 Gene (Entity type)	ENSG00000124333 - vesicle associated membrane protein 7
	AUH Gene (Entity type)	ENSG00000148090 - AU RNA binding methylglutaconyl-CoA hydratase

SMC3

Gene (Entity type)

ENSG00000108055 - structural maintenance of chromosomes 3

ATP8B4

Gene (Entity type)

ENSG00000104043 - ATPase phospholipid transporting 8B4 (putative)

HPGDS

Gene (Entity type)

ENSG00000163106 - hematopoietic prostaglandin D synthase

SLK

Gene (Entity type)

ENSG00000065613 - STE20 like kinase

CAMLG

Gene (Entity type)

ENSG00000164615 - calcium modulating ligand

BICD2

Gene (Entity type)

ENSG00000185963 - BICD cargo adaptor 2

INTS13

Gene (Entity type)

ENSG00000064102 - integrator complex subunit 13

PRPF3

Gene (Entity type)

ENSG00000117360 - pre-mRNA processing factor 3

VAMP7

Gene (Entity type)

ENSG00000124333 - vesicle associated membrane protein 7

AUH

Gene (Entity type)

ENSG00000148090 - AU RNA binding methylglutaconyl-CoA hydratase

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.