GSE125956 SYK knockdown 4 v 1 human dn (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE125956_SYK knockdown_4_v_1_human_dn.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE125956_SYK knockdown_4_v_1_human_dn.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE125956_SYK knockdown_4_v_1_human_dn.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE125956_SYK knockdown_4_v_1_human_dn.

Results found

Linked to

	Label	Description
	GAS5 Gene (Entity type)	ENSG00000234741 - growth arrest specific 5
	SNHG29 Gene (Entity type)	ENSG00000175061 - small nucleolar RNA host gene 29
	LOC112694756 Gene (Entity type)	ENSG00000285043 - uncharaterized LOC112694756
	PAX8-AS1 Gene (Entity type)	ENSG00000189223 - PAX8 antisense RNA 1
	LINC00665 Gene (Entity type)	ENSG00000232677 - long intergenic non-protein coding RNA 665
	MRPL45 Gene (Entity type)	ENSG00000278845 - mitochondrial ribosomal protein L45
	MTCO2P12 Gene (Entity type)	ENSG00000229344 - MT-CO2 pseudogene 12
	UCA1 Gene (Entity type)	ENSG00000214049 - urothelial cancer associated 1
	MRFAP1L2 Gene (Entity type)	ENSG00000170846 - Morf4 family associated protein 1 like 2
	FRG1CP Gene (Entity type)	ENSG00000282826 - FSHD region gene 1 family member C, pseudogene

GAS5

Gene (Entity type)

ENSG00000234741 - growth arrest specific 5

SNHG29

Gene (Entity type)

ENSG00000175061 - small nucleolar RNA host gene 29

LOC112694756

Gene (Entity type)

ENSG00000285043 - uncharaterized LOC112694756

PAX8-AS1

Gene (Entity type)

ENSG00000189223 - PAX8 antisense RNA 1

LINC00665

Gene (Entity type)

ENSG00000232677 - long intergenic non-protein coding RNA 665

MRPL45

Gene (Entity type)

ENSG00000278845 - mitochondrial ribosomal protein L45

MTCO2P12

Gene (Entity type)

ENSG00000229344 - MT-CO2 pseudogene 12

UCA1

Gene (Entity type)

ENSG00000214049 - urothelial cancer associated 1

MRFAP1L2

Gene (Entity type)

ENSG00000170846 - Morf4 family associated protein 1 like 2

FRG1CP

Gene (Entity type)

ENSG00000282826 - FSHD region gene 1 family member C, pseudogene

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.