SRMS Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with SRMS Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with SRMS Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with SRMS Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with SRMS Up.

Results found

Linked to

	Label	Description
	CDR2 Gene (Entity type)	ENSG00000140743 - cerebellar degeneration related protein 2
	HIGD2A Gene (Entity type)	ENSG00000146066 - HIG1 hypoxia inducible domain family member 2A
	CCDC28A Gene (Entity type)	ENSG00000024862 - coiled-coil domain containing 28A
	ERCC5 Gene (Entity type)	ENSG00000134899 - ERCC excision repair 5, endonuclease
	MST1R Gene (Entity type)	ENSG00000164078 - macrophage stimulating 1 receptor
	PRPH Gene (Entity type)	ENSG00000135406 - peripherin
	MST1 Gene (Entity type)	ENSG00000173531 - macrophage stimulating 1
	SAP30BP Gene (Entity type)	ENSG00000161526 - SAP30 binding protein
	LCMT1 Gene (Entity type)	ENSG00000205629 - leucine carboxyl methyltransferase 1
	PHOX2B Gene (Entity type)	ENSG00000109132 - paired like homeobox 2B

CDR2

Gene (Entity type)

ENSG00000140743 - cerebellar degeneration related protein 2

HIGD2A

Gene (Entity type)

ENSG00000146066 - HIG1 hypoxia inducible domain family member 2A

CCDC28A

Gene (Entity type)

ENSG00000024862 - coiled-coil domain containing 28A

ERCC5

Gene (Entity type)

ENSG00000134899 - ERCC excision repair 5, endonuclease

MST1R

Gene (Entity type)

ENSG00000164078 - macrophage stimulating 1 receptor

PRPH

Gene (Entity type)

ENSG00000135406 - peripherin

MST1

Gene (Entity type)

ENSG00000173531 - macrophage stimulating 1

SAP30BP

Gene (Entity type)

ENSG00000161526 - SAP30 binding protein

LCMT1

Gene (Entity type)

ENSG00000205629 - leucine carboxyl methyltransferase 1

PHOX2B

Gene (Entity type)

ENSG00000109132 - paired like homeobox 2B

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.