CDA Down (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with CDA Down.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with CDA Down.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with CDA Down.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with CDA Down.

Results found

Linked to

	Label	Description
	HDAC5 Gene (Entity type)	ENSG00000108840 - histone deacetylase 5
	PSEN1 Gene (Entity type)	ENSG00000080815 - presenilin 1
	TNFSF9 Gene (Entity type)	ENSG00000125657 - TNF superfamily member 9
	CDC34 Gene (Entity type)	ENSG00000099804 - cell division cycle 34, ubiquitin conjugating enzyme
	BUD31 Gene (Entity type)	ENSG00000106245 - BUD31 spliceosome associated protein
	ATF7IP Gene (Entity type)	ENSG00000171681 - activating transcription factor 7 interacting protein
	TGM1 Gene (Entity type)	ENSG00000092295 - transglutaminase 1
	GTF2B Gene (Entity type)	ENSG00000137947 - general transcription factor IIB
	ZNF394 Gene (Entity type)	ENSG00000160908 - zinc finger protein 394
	CCDC28A Gene (Entity type)	ENSG00000024862 - coiled-coil domain containing 28A

HDAC5

Gene (Entity type)

ENSG00000108840 - histone deacetylase 5

PSEN1

Gene (Entity type)

ENSG00000080815 - presenilin 1

TNFSF9

Gene (Entity type)

ENSG00000125657 - TNF superfamily member 9

CDC34

Gene (Entity type)

ENSG00000099804 - cell division cycle 34, ubiquitin conjugating enzyme

BUD31

Gene (Entity type)

ENSG00000106245 - BUD31 spliceosome associated protein

ATF7IP

Gene (Entity type)

ENSG00000171681 - activating transcription factor 7 interacting protein

TGM1

Gene (Entity type)

ENSG00000092295 - transglutaminase 1

GTF2B

Gene (Entity type)

ENSG00000137947 - general transcription factor IIB

ZNF394

Gene (Entity type)

ENSG00000160908 - zinc finger protein 394

CCDC28A

Gene (Entity type)

ENSG00000024862 - coiled-coil domain containing 28A

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CFDE Workbench

Consortium

Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.