GSE225869 CD44 knockdown 1 v 0 human dn (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE225869_CD44 knockdown_1_v_0_human_dn.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE225869_CD44 knockdown_1_v_0_human_dn.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE225869_CD44 knockdown_1_v_0_human_dn.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE225869_CD44 knockdown_1_v_0_human_dn.

Results found

Linked to

	Label	Description
	VARS1 Gene (Entity type)	ENSG00000204394 - valyl-tRNA synthetase 1
	MIR4435-2HG Gene (Entity type)	ENSG00000172965 - MIR4435-2 host gene
	SNHG1 Gene (Entity type)	ENSG00000255717 - small nucleolar RNA host gene 1
	SNHG3 Gene (Entity type)	ENSG00000242125 - small nucleolar RNA host gene 3
	LOC112694756 Gene (Entity type)	ENSG00000285043 - uncharaterized LOC112694756
	SNHG4 Gene (Entity type)	ENSG00000281398 - small nucleolar RNA host gene 4
	MTCO2P12 Gene (Entity type)	ENSG00000229344 - MT-CO2 pseudogene 12
	MIR100HG Gene (Entity type)	ENSG00000255248 - mir-100-let-7a-2-mir-125b-1 cluster host gene
	DUBR Gene (Entity type)	ENSG00000243701 - DPPA2 upstream binding RNA
	CDH13-AS2 Gene (Entity type)	ENSG00000260228 - CDH13 antisense RNA 2

VARS1

Gene (Entity type)

ENSG00000204394 - valyl-tRNA synthetase 1

MIR4435-2HG

Gene (Entity type)

ENSG00000172965 - MIR4435-2 host gene

SNHG1

Gene (Entity type)

ENSG00000255717 - small nucleolar RNA host gene 1

SNHG3

Gene (Entity type)

ENSG00000242125 - small nucleolar RNA host gene 3

LOC112694756

Gene (Entity type)

ENSG00000285043 - uncharaterized LOC112694756

SNHG4

Gene (Entity type)

ENSG00000281398 - small nucleolar RNA host gene 4

MTCO2P12

Gene (Entity type)

ENSG00000229344 - MT-CO2 pseudogene 12

MIR100HG

Gene (Entity type)

ENSG00000255248 - mir-100-let-7a-2-mir-125b-1 cluster host gene

DUBR

Gene (Entity type)

ENSG00000243701 - DPPA2 upstream binding RNA

CDH13-AS2

Gene (Entity type)

ENSG00000260228 - CDH13 antisense RNA 2

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.