GSE57871 GLI1 PSMD13 knockdown HCT 116 Vorinostat 1 v 9 human up (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_1_v_9_human_up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_1_v_9_human_up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_1_v_9_human_up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_1_v_9_human_up.

Results found

Linked to

	Label	Description
	PPP2R2C Gene (Entity type)	ENSG00000074211 - protein phosphatase 2 regulatory subunit Bgamma
	BLVRA Gene (Entity type)	ENSG00000106605 - biliverdin reductase A
	CAT Gene (Entity type)	ENSG00000121691 - catalase
	GRB2 Gene (Entity type)	ENSG00000177885 - growth factor receptor bound protein 2
	HDAC5 Gene (Entity type)	ENSG00000108840 - histone deacetylase 5
	MEGF9 Gene (Entity type)	ENSG00000106780 - multiple EGF like domains 9
	ERN1 Gene (Entity type)	ENSG00000178607 - endoplasmic reticulum to nucleus signaling 1
	HLA-DMA Gene (Entity type)	ENSG00000204257 - major histocompatibility complex, class II, DM alpha
	THRA Gene (Entity type)	ENSG00000126351 - thyroid hormone receptor alpha
	ASMTL Gene (Entity type)	ENSG00000169093 - acetylserotonin O-methyltransferase like

PPP2R2C

Gene (Entity type)

ENSG00000074211 - protein phosphatase 2 regulatory subunit Bgamma

BLVRA

Gene (Entity type)

ENSG00000106605 - biliverdin reductase A

CAT

Gene (Entity type)

ENSG00000121691 - catalase

GRB2

Gene (Entity type)

ENSG00000177885 - growth factor receptor bound protein 2

HDAC5

Gene (Entity type)

ENSG00000108840 - histone deacetylase 5

MEGF9

Gene (Entity type)

ENSG00000106780 - multiple EGF like domains 9

ERN1

Gene (Entity type)

ENSG00000178607 - endoplasmic reticulum to nucleus signaling 1

HLA-DMA

Gene (Entity type)

ENSG00000204257 - major histocompatibility complex, class II, DM alpha

THRA

Gene (Entity type)

ENSG00000126351 - thyroid hormone receptor alpha

ASMTL

Gene (Entity type)

ENSG00000169093 - acetylserotonin O-methyltransferase like

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.