SDC2 Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with SDC2 Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with SDC2 Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with SDC2 Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with SDC2 Up.

Results found

Linked to

	Label	Description
	HDAC6 Gene (Entity type)	ENSG00000094631 - histone deacetylase 6
	MIF Gene (Entity type)	ENSG00000240972 - macrophage migration inhibitory factor
	SOX13 Gene (Entity type)	ENSG00000143842 - SRY-box transcription factor 13
	XPC Gene (Entity type)	ENSG00000154767 - XPC complex subunit, DNA damage recognition and repair factor
	KLHL2 Gene (Entity type)	ENSG00000109466 - kelch like family member 2
	PAIP2B Gene (Entity type)	ENSG00000124374 - poly(A) binding protein interacting protein 2B
	SPG11 Gene (Entity type)	ENSG00000104133 - SPG11 vesicle trafficking associated, spatacsin
	CACNA2D3 Gene (Entity type)	ENSG00000157445 - calcium voltage-gated channel auxiliary subunit alpha2delta 3
	DMXL1 Gene (Entity type)	ENSG00000172869 - Dmx like 1
	RUSC1 Gene (Entity type)	ENSG00000160753 - RUN and SH3 domain containing 1

HDAC6

Gene (Entity type)

ENSG00000094631 - histone deacetylase 6

MIF

Gene (Entity type)

ENSG00000240972 - macrophage migration inhibitory factor

SOX13

Gene (Entity type)

ENSG00000143842 - SRY-box transcription factor 13

XPC

Gene (Entity type)

ENSG00000154767 - XPC complex subunit, DNA damage recognition and repair factor

KLHL2

Gene (Entity type)

ENSG00000109466 - kelch like family member 2

PAIP2B

Gene (Entity type)

ENSG00000124374 - poly(A) binding protein interacting protein 2B

SPG11

Gene (Entity type)

ENSG00000104133 - SPG11 vesicle trafficking associated, spatacsin

CACNA2D3

Gene (Entity type)

ENSG00000157445 - calcium voltage-gated channel auxiliary subunit alpha2delta 3

DMXL1

Gene (Entity type)

ENSG00000172869 - Dmx like 1

RUSC1

Gene (Entity type)

ENSG00000160753 - RUN and SH3 domain containing 1

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.