NPPB Up (Gene Set)

Dcc Asset:

LINCS L1000 Chem Pert Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with NPPB Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with NPPB Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with NPPB Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with NPPB Up.

Results found

Linked to

	Label	Description
	COPS5 Gene (Entity type)	ENSG00000121022 - COP9 signalosome subunit 5
	VPS4B Gene (Entity type)	ENSG00000119541 - vacuolar protein sorting 4 homolog B
	N4BP2L2 Gene (Entity type)	ENSG00000244754 - NEDD4 binding protein 2 like 2
	PTBP2 Gene (Entity type)	ENSG00000117569 - polypyrimidine tract binding protein 2
	CFAP20 Gene (Entity type)	ENSG00000070761 - cilia and flagella associated protein 20
	BICD1 Gene (Entity type)	ENSG00000151746 - BICD cargo adaptor 1
	PHC1 Gene (Entity type)	ENSG00000111752 - polyhomeotic homolog 1
	VCPKMT Gene (Entity type)	ENSG00000100483 - valosin containing protein lysine methyltransferase
	SMAD2 Gene (Entity type)	ENSG00000175387 - SMAD family member 2
	CRH Gene (Entity type)	ENSG00000147571 - corticotropin releasing hormone

COPS5

Gene (Entity type)

ENSG00000121022 - COP9 signalosome subunit 5

VPS4B

Gene (Entity type)

ENSG00000119541 - vacuolar protein sorting 4 homolog B

N4BP2L2

Gene (Entity type)

ENSG00000244754 - NEDD4 binding protein 2 like 2

PTBP2

Gene (Entity type)

ENSG00000117569 - polypyrimidine tract binding protein 2

CFAP20

Gene (Entity type)

ENSG00000070761 - cilia and flagella associated protein 20

BICD1

Gene (Entity type)

ENSG00000151746 - BICD cargo adaptor 1

PHC1

Gene (Entity type)

ENSG00000111752 - polyhomeotic homolog 1

VCPKMT

Gene (Entity type)

ENSG00000100483 - valosin containing protein lysine methyltransferase

SMAD2

Gene (Entity type)

ENSG00000175387 - SMAD family member 2

CRH

Gene (Entity type)

ENSG00000147571 - corticotropin releasing hormone

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.