GSE138937 Rad21 CTCF knockdown SLK 2 v 0 human dn (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

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Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE138937_Rad21_CTCF knockdown_SLK_2_v_0_human_dn.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE138937_Rad21_CTCF knockdown_SLK_2_v_0_human_dn.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE138937_Rad21_CTCF knockdown_SLK_2_v_0_human_dn.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE138937_Rad21_CTCF knockdown_SLK_2_v_0_human_dn.

Results found

Linked to

	Label	Description
	CMPK1 Gene (Entity type)	ENSG00000162368 - cytidine/uridine monophosphate kinase 1
	HDAC5 Gene (Entity type)	ENSG00000108840 - histone deacetylase 5
	NRG1 Gene (Entity type)	ENSG00000157168 - neuregulin 1
	IGFBP7 Gene (Entity type)	ENSG00000163453 - insulin like growth factor binding protein 7
	ARF6 Gene (Entity type)	ENSG00000165527 - ARF GTPase 6
	USP9X Gene (Entity type)	ENSG00000124486 - ubiquitin specific peptidase 9 X-linked
	MDH1 Gene (Entity type)	ENSG00000014641 - malate dehydrogenase 1
	SNRPA1 Gene (Entity type)	ENSG00000131876 - small nuclear ribonucleoprotein polypeptide A'
	TRIM9 Gene (Entity type)	ENSG00000100505 - tripartite motif containing 9
	ACBD3 Gene (Entity type)	ENSG00000182827 - acyl-CoA binding domain containing 3

CMPK1

Gene (Entity type)

ENSG00000162368 - cytidine/uridine monophosphate kinase 1

HDAC5

Gene (Entity type)

ENSG00000108840 - histone deacetylase 5

NRG1

Gene (Entity type)

ENSG00000157168 - neuregulin 1

IGFBP7

Gene (Entity type)

ENSG00000163453 - insulin like growth factor binding protein 7

ARF6

Gene (Entity type)

ENSG00000165527 - ARF GTPase 6

USP9X

Gene (Entity type)

ENSG00000124486 - ubiquitin specific peptidase 9 X-linked

MDH1

Gene (Entity type)

ENSG00000014641 - malate dehydrogenase 1

SNRPA1

Gene (Entity type)

ENSG00000131876 - small nuclear ribonucleoprotein polypeptide A'

TRIM9

Gene (Entity type)

ENSG00000100505 - tripartite motif containing 9

ACBD3

Gene (Entity type)

ENSG00000182827 - acyl-CoA binding domain containing 3

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.