SHMT2 Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with SHMT2 Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with SHMT2 Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with SHMT2 Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with SHMT2 Up.

Results found

Linked to

	Label	Description
	SLC35A3 Gene (Entity type)	ENSG00000117620 - solute carrier family 35 member A3
	HCK Gene (Entity type)	ENSG00000101336 - HCK proto-oncogene, Src family tyrosine kinase
	E2F5 Gene (Entity type)	ENSG00000133740 - E2F transcription factor 5
	FBXW2 Gene (Entity type)	ENSG00000119402 - F-box and WD repeat domain containing 2
	RPA2 Gene (Entity type)	ENSG00000117748 - replication protein A2
	PPID Gene (Entity type)	ENSG00000171497 - peptidylprolyl isomerase D
	ZDHHC4 Gene (Entity type)	ENSG00000136247 - zDHHC palmitoyltransferase 4
	UBXN7 Gene (Entity type)	ENSG00000163960 - UBX domain protein 7
	DYNC1I1 Gene (Entity type)	ENSG00000158560 - dynein cytoplasmic 1 intermediate chain 1
	ARHGEF9 Gene (Entity type)	ENSG00000131089 - Cdc42 guanine nucleotide exchange factor 9

SLC35A3

Gene (Entity type)

ENSG00000117620 - solute carrier family 35 member A3

HCK

Gene (Entity type)

ENSG00000101336 - HCK proto-oncogene, Src family tyrosine kinase

E2F5

Gene (Entity type)

ENSG00000133740 - E2F transcription factor 5

FBXW2

Gene (Entity type)

ENSG00000119402 - F-box and WD repeat domain containing 2

RPA2

Gene (Entity type)

ENSG00000117748 - replication protein A2

PPID

Gene (Entity type)

ENSG00000171497 - peptidylprolyl isomerase D

ZDHHC4

Gene (Entity type)

ENSG00000136247 - zDHHC palmitoyltransferase 4

UBXN7

Gene (Entity type)

ENSG00000163960 - UBX domain protein 7

DYNC1I1

Gene (Entity type)

ENSG00000158560 - dynein cytoplasmic 1 intermediate chain 1

ARHGEF9

Gene (Entity type)

ENSG00000131089 - Cdc42 guanine nucleotide exchange factor 9

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.