GSE128255 NDP knockdown stem cell 3 v 0 human up (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE128255_NDP knockdown_stem cell_3_v_0_human_up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE128255_NDP knockdown_stem cell_3_v_0_human_up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE128255_NDP knockdown_stem cell_3_v_0_human_up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE128255_NDP knockdown_stem cell_3_v_0_human_up.

Results found

Linked to

	Label	Description
	ARHGAP23 Gene (Entity type)	Rho GTPase activating protein 23
	FAM106A Gene (Entity type)	family with sequence similarity 106 member A
	PVT1 Gene (Entity type)	Pvt1 oncogene
	CROCCP2 Gene (Entity type)	CROCC pseudogene 2
	CUTALP Gene (Entity type)	cutA divalent cation tolerance like, pseudogene
	H3C6 Gene (Entity type)	H3 clustered histone 6
	PSMG3-AS1 Gene (Entity type)	PSMG3 antisense RNA 1
	ZNF204P Gene (Entity type)	zinc finger protein 204, pseudogene
	HERPUD2-AS1 Gene (Entity type)	HERPUD2 antisense RNA 1
	TMEM198B Gene (Entity type)	transmembrane protein 198B (pseudogene)

ARHGAP23

Gene (Entity type)

Rho GTPase activating protein 23

FAM106A

Gene (Entity type)

family with sequence similarity 106 member A

PVT1

Gene (Entity type)

Pvt1 oncogene

CROCCP2

Gene (Entity type)

CROCC pseudogene 2

CUTALP

Gene (Entity type)

cutA divalent cation tolerance like, pseudogene

H3C6

Gene (Entity type)

H3 clustered histone 6

PSMG3-AS1

Gene (Entity type)

PSMG3 antisense RNA 1

ZNF204P

Gene (Entity type)

zinc finger protein 204, pseudogene

HERPUD2-AS1

Gene (Entity type)

HERPUD2 antisense RNA 1

TMEM198B

Gene (Entity type)

transmembrane protein 198B (pseudogene)

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.