GSE225869 CD44 knockdown 2 v 0 human up (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE225869_CD44 knockdown_2_v_0_human_up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE225869_CD44 knockdown_2_v_0_human_up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE225869_CD44 knockdown_2_v_0_human_up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE225869_CD44 knockdown_2_v_0_human_up.

Results found

Linked to

	Label	Description
	SYNRG Gene (Entity type)	ENSG00000275066 - synergin gamma
	DDX52 Gene (Entity type)	ENSG00000278053 - DExD-box helicase 52
	TRIM16L Gene (Entity type)	ENSG00000291110 - tripartite motif containing 16 like (pseudogene)
	GGNBP2 Gene (Entity type)	ENSG00000278311 - gametogenetin binding protein 2
	LINC02693 Gene (Entity type)	ENSG00000212719 - long intergenic non-protein coding RNA 2693
	NBPF26 Gene (Entity type)	ENSG00000273136 - NBPF member 26
	H3C6 Gene (Entity type)	ENSG00000274750 - H3 clustered histone 6
	MSANTD7 Gene (Entity type)	ENSG00000284024 - Myb/SANT DNA binding domain containing 7
	ZNF542P Gene (Entity type)	ENSG00000290720 - zinc finger protein 542, pseudogene
	H2BC20P Gene (Entity type)	ENSG00000261716 - H2B clustered histone 20, pseudogene

SYNRG

Gene (Entity type)

ENSG00000275066 - synergin gamma

DDX52

Gene (Entity type)

ENSG00000278053 - DExD-box helicase 52

TRIM16L

Gene (Entity type)

ENSG00000291110 - tripartite motif containing 16 like (pseudogene)

GGNBP2

Gene (Entity type)

ENSG00000278311 - gametogenetin binding protein 2

LINC02693

Gene (Entity type)

ENSG00000212719 - long intergenic non-protein coding RNA 2693

NBPF26

Gene (Entity type)

ENSG00000273136 - NBPF member 26

H3C6

Gene (Entity type)

ENSG00000274750 - H3 clustered histone 6

MSANTD7

Gene (Entity type)

ENSG00000284024 - Myb/SANT DNA binding domain containing 7

ZNF542P

Gene (Entity type)

ENSG00000290720 - zinc finger protein 542, pseudogene

H2BC20P

Gene (Entity type)

ENSG00000261716 - H2B clustered histone 20, pseudogene

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The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.