SHMT2 Down (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with SHMT2 Down.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with SHMT2 Down.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with SHMT2 Down.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with SHMT2 Down.

Results found

Linked to

	Label	Description
	PJA1 Gene (Entity type)	ENSG00000181191 - praja ring finger ubiquitin ligase 1
	SEC16A Gene (Entity type)	ENSG00000148396 - SEC16 homolog A, endoplasmic reticulum export factor
	TUFM Gene (Entity type)	ENSG00000178952 - Tu translation elongation factor, mitochondrial
	PPP1R9A Gene (Entity type)	ENSG00000158528 - protein phosphatase 1 regulatory subunit 9A
	SEC23B Gene (Entity type)	ENSG00000101310 - SEC23 homolog B, COPII component
	PSMB5 Gene (Entity type)	ENSG00000100804 - proteasome 20S subunit beta 5
	ME3 Gene (Entity type)	ENSG00000151376 - malic enzyme 3
	CKLF Gene (Entity type)	ENSG00000217555 - chemokine like factor
	PHKA2 Gene (Entity type)	ENSG00000044446 - phosphorylase kinase regulatory subunit alpha 2
	RNF4 Gene (Entity type)	ENSG00000063978 - ring finger protein 4

PJA1

Gene (Entity type)

ENSG00000181191 - praja ring finger ubiquitin ligase 1

SEC16A

Gene (Entity type)

ENSG00000148396 - SEC16 homolog A, endoplasmic reticulum export factor

TUFM

Gene (Entity type)

ENSG00000178952 - Tu translation elongation factor, mitochondrial

PPP1R9A

Gene (Entity type)

ENSG00000158528 - protein phosphatase 1 regulatory subunit 9A

SEC23B

Gene (Entity type)

ENSG00000101310 - SEC23 homolog B, COPII component

PSMB5

Gene (Entity type)

ENSG00000100804 - proteasome 20S subunit beta 5

ME3

Gene (Entity type)

ENSG00000151376 - malic enzyme 3

CKLF

Gene (Entity type)

ENSG00000217555 - chemokine like factor

PHKA2

Gene (Entity type)

ENSG00000044446 - phosphorylase kinase regulatory subunit alpha 2

RNF4

Gene (Entity type)

ENSG00000063978 - ring finger protein 4

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CFDE Workbench

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.