GSE57871 GLI1 PSMD13 knockdown HCT 116 Vorinostat 6 v 10 human dn (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_6_v_10_human_dn.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_6_v_10_human_dn.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_6_v_10_human_dn.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_6_v_10_human_dn.

Results found

Linked to

	Label	Description
	DUBR Gene (Entity type)	DPPA2 upstream binding RNA
	MRFAP1L2 Gene (Entity type)	Morf4 family associated protein 1 like 2
	TRIM15 Gene (Entity type)	tripartite motif containing 15
	PCAT7 Gene (Entity type)	prostate cancer associated transcript 7
	FLVCR1-DT Gene (Entity type)	FLVCR1 divergent transcript
	DDX11L2 Gene (Entity type)	DEAD/H-box helicase 11 like 2 (pseudogene)
	PTMAP5 Gene (Entity type)	prothymosin alpha pseudogene 5
	CFAP58-DT Gene (Entity type)	CFAP58 divergent transcript
	ESAM-AS1 Gene (Entity type)	ESAM antisense RNA 1
	LINC00515 Gene (Entity type)	long intergenic non-protein coding RNA 515

DUBR

Gene (Entity type)

DPPA2 upstream binding RNA

MRFAP1L2

Gene (Entity type)

Morf4 family associated protein 1 like 2

TRIM15

Gene (Entity type)

tripartite motif containing 15

PCAT7

Gene (Entity type)

prostate cancer associated transcript 7

FLVCR1-DT

Gene (Entity type)

FLVCR1 divergent transcript

DDX11L2

Gene (Entity type)

DEAD/H-box helicase 11 like 2 (pseudogene)

PTMAP5

Gene (Entity type)

prothymosin alpha pseudogene 5

CFAP58-DT

Gene (Entity type)

CFAP58 divergent transcript

ESAM-AS1

Gene (Entity type)

ESAM antisense RNA 1

LINC00515

Gene (Entity type)

long intergenic non-protein coding RNA 515

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.