GSE238116 EGR1 HCC overexpression MHCC97-H PLC-PRF-5 1 v 2 human dn (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE238116_EGR1_HCC overexpression_MHCC97-H_PLC-PRF-5_1_v_2_human_dn.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE238116_EGR1_HCC overexpression_MHCC97-H_PLC-PRF-5_1_v_2_human_dn.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE238116_EGR1_HCC overexpression_MHCC97-H_PLC-PRF-5_1_v_2_human_dn.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE238116_EGR1_HCC overexpression_MHCC97-H_PLC-PRF-5_1_v_2_human_dn.

Results found

Linked to

	Label	Description
	PTPN12 Gene (Entity type)	ENSG00000127947 - protein tyrosine phosphatase non-receptor type 12
	HDAC2 Gene (Entity type)	ENSG00000196591 - histone deacetylase 2
	ATMIN Gene (Entity type)	ENSG00000166454 - ATM interactor
	C2 Gene (Entity type)	ENSG00000166278 - complement C2
	TRIM24 Gene (Entity type)	ENSG00000122779 - tripartite motif containing 24
	NRG1 Gene (Entity type)	ENSG00000157168 - neuregulin 1
	SMC3 Gene (Entity type)	ENSG00000108055 - structural maintenance of chromosomes 3
	EGLN1 Gene (Entity type)	ENSG00000135766 - egl-9 family hypoxia inducible factor 1
	PPP2R5C Gene (Entity type)	ENSG00000078304 - protein phosphatase 2 regulatory subunit B'gamma
	BMPR1A Gene (Entity type)	ENSG00000107779 - bone morphogenetic protein receptor type 1A

PTPN12

Gene (Entity type)

ENSG00000127947 - protein tyrosine phosphatase non-receptor type 12

HDAC2

Gene (Entity type)

ENSG00000196591 - histone deacetylase 2

ATMIN

Gene (Entity type)

ENSG00000166454 - ATM interactor

Gene (Entity type)

ENSG00000166278 - complement C2

TRIM24

Gene (Entity type)

ENSG00000122779 - tripartite motif containing 24

NRG1

Gene (Entity type)

ENSG00000157168 - neuregulin 1

SMC3

Gene (Entity type)

ENSG00000108055 - structural maintenance of chromosomes 3

EGLN1

Gene (Entity type)

ENSG00000135766 - egl-9 family hypoxia inducible factor 1

PPP2R5C

Gene (Entity type)

ENSG00000078304 - protein phosphatase 2 regulatory subunit B'gamma

BMPR1A

Gene (Entity type)

ENSG00000107779 - bone morphogenetic protein receptor type 1A

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.