GSE57871 GLI1 PSMD13 knockdown HCT 116 Vorinostat 8 v 9 human dn (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_8_v_9_human_dn.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_8_v_9_human_dn.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_8_v_9_human_dn.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_8_v_9_human_dn.

Results found

Linked to

	Label	Description
	MRPS18B Gene (Entity type)	mitochondrial ribosomal protein S18B
	DANCR Gene (Entity type)	differentiation antagonizing non-protein coding RNA
	SNHG4 Gene (Entity type)	small nucleolar RNA host gene 4
	PAX8-AS1 Gene (Entity type)	PAX8 antisense RNA 1
	DHRSX Gene (Entity type)	dehydrogenase/reductase X-linked
	SNHG8 Gene (Entity type)	small nucleolar RNA host gene 8
	FMC1-LUC7L2 Gene (Entity type)	FMC1-LUC7L2 readthrough
	ELFN1-AS1 Gene (Entity type)	ELFN1 antisense RNA 1
	SLC9A3-OT1 Gene (Entity type)	SLC9A3 3' UTR overlapping transcript 1
	GCSHP5 Gene (Entity type)	GCSH pseudogene 5

MRPS18B

Gene (Entity type)

mitochondrial ribosomal protein S18B

DANCR

Gene (Entity type)

differentiation antagonizing non-protein coding RNA

SNHG4

Gene (Entity type)

small nucleolar RNA host gene 4

PAX8-AS1

Gene (Entity type)

PAX8 antisense RNA 1

DHRSX

Gene (Entity type)

dehydrogenase/reductase X-linked

SNHG8

Gene (Entity type)

small nucleolar RNA host gene 8

FMC1-LUC7L2

Gene (Entity type)

FMC1-LUC7L2 readthrough

ELFN1-AS1

Gene (Entity type)

ELFN1 antisense RNA 1

SLC9A3-OT1

Gene (Entity type)

SLC9A3 3' UTR overlapping transcript 1

GCSHP5

Gene (Entity type)

GCSH pseudogene 5

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.