GSE128255 NDP knockdown stem cell 3 v 2 human dn (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE128255_NDP knockdown_stem cell_3_v_2_human_dn.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE128255_NDP knockdown_stem cell_3_v_2_human_dn.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE128255_NDP knockdown_stem cell_3_v_2_human_dn.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE128255_NDP knockdown_stem cell_3_v_2_human_dn.

Results found

Linked to

	Label	Description
	EGF Gene (Entity type)	ENSG00000138798 - epidermal growth factor
	HDAC6 Gene (Entity type)	ENSG00000094631 - histone deacetylase 6
	PJA1 Gene (Entity type)	ENSG00000181191 - praja ring finger ubiquitin ligase 1
	HDAC5 Gene (Entity type)	ENSG00000108840 - histone deacetylase 5
	TRIM24 Gene (Entity type)	ENSG00000122779 - tripartite motif containing 24
	POLA2 Gene (Entity type)	ENSG00000014138 - DNA polymerase alpha 2, accessory subunit
	DYNLL2 Gene (Entity type)	ENSG00000264364 - dynein light chain LC8-type 2
	SMC3 Gene (Entity type)	ENSG00000108055 - structural maintenance of chromosomes 3
	CHAF1B Gene (Entity type)	ENSG00000159259 - chromatin assembly factor 1 subunit B
	PAFAH1B3 Gene (Entity type)	ENSG00000079462 - platelet activating factor acetylhydrolase 1b catalytic subunit 3

EGF

Gene (Entity type)

ENSG00000138798 - epidermal growth factor

HDAC6

Gene (Entity type)

ENSG00000094631 - histone deacetylase 6

PJA1

Gene (Entity type)

ENSG00000181191 - praja ring finger ubiquitin ligase 1

HDAC5

Gene (Entity type)

ENSG00000108840 - histone deacetylase 5

TRIM24

Gene (Entity type)

ENSG00000122779 - tripartite motif containing 24

POLA2

Gene (Entity type)

ENSG00000014138 - DNA polymerase alpha 2, accessory subunit

DYNLL2

Gene (Entity type)

ENSG00000264364 - dynein light chain LC8-type 2

SMC3

Gene (Entity type)

ENSG00000108055 - structural maintenance of chromosomes 3

CHAF1B

Gene (Entity type)

ENSG00000159259 - chromatin assembly factor 1 subunit B

PAFAH1B3

Gene (Entity type)

ENSG00000079462 - platelet activating factor acetylhydrolase 1b catalytic subunit 3

DISPLAY PER PAGE

CFDE Workbench

Consortium

Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.