TK2 Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with TK2 Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with TK2 Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with TK2 Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with TK2 Up.

Results found

Linked to

	Label	Description
	EFEMP2 Gene (Entity type)	ENSG00000172638 - EGF-like fibulin extracellular matrix protein 2
	DVL3 Gene (Entity type)	ENSG00000161202 - dishevelled segment polarity protein 3
	PCBP4 Gene (Entity type)	ENSG00000090097 - poly(rC) binding protein 4
	PRPH Gene (Entity type)	ENSG00000135406 - peripherin
	SCMH1 Gene (Entity type)	ENSG00000010803 - Scm polycomb group protein homolog 1
	PRPF6 Gene (Entity type)	ENSG00000101161 - pre-mRNA processing factor 6
	CIB2 Gene (Entity type)	ENSG00000136425 - calcium and integrin binding family member 2
	DCX Gene (Entity type)	ENSG00000077279 - doublecortin
	METTL17 Gene (Entity type)	ENSG00000165792 - methyltransferase like 17
	SDR39U1 Gene (Entity type)	ENSG00000100445 - short chain dehydrogenase/reductase family 39U member 1

EFEMP2

Gene (Entity type)

ENSG00000172638 - EGF-like fibulin extracellular matrix protein 2

DVL3

Gene (Entity type)

ENSG00000161202 - dishevelled segment polarity protein 3

PCBP4

Gene (Entity type)

ENSG00000090097 - poly(rC) binding protein 4

PRPH

Gene (Entity type)

ENSG00000135406 - peripherin

SCMH1

Gene (Entity type)

ENSG00000010803 - Scm polycomb group protein homolog 1

PRPF6

Gene (Entity type)

ENSG00000101161 - pre-mRNA processing factor 6

CIB2

Gene (Entity type)

ENSG00000136425 - calcium and integrin binding family member 2

DCX

Gene (Entity type)

ENSG00000077279 - doublecortin

METTL17

Gene (Entity type)

ENSG00000165792 - methyltransferase like 17

SDR39U1

Gene (Entity type)

ENSG00000100445 - short chain dehydrogenase/reductase family 39U member 1

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.