PRUNE1 Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with PRUNE1 Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with PRUNE1 Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with PRUNE1 Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with PRUNE1 Up.

Results found

Linked to

	Label	Description
	OGFOD1 Gene (Entity type)	ENSG00000087263 - 2-oxoglutarate and iron dependent oxygenase domain containing 1
	MED28 Gene (Entity type)	ENSG00000118579 - mediator complex subunit 28
	TMPRSS11E Gene (Entity type)	ENSG00000087128 - transmembrane serine protease 11E
	PPID Gene (Entity type)	ENSG00000171497 - peptidylprolyl isomerase D
	KCTD20 Gene (Entity type)	ENSG00000112078 - potassium channel tetramerization domain containing 20
	BUD23 Gene (Entity type)	ENSG00000071462 - BUD23 rRNA methyltransferase and ribosome maturation factor
	PSMA3 Gene (Entity type)	ENSG00000100567 - proteasome 20S subunit alpha 3
	UBXN7 Gene (Entity type)	ENSG00000163960 - UBX domain protein 7
	MOB4 Gene (Entity type)	ENSG00000115540 - MOB family member 4, phocein
	TAF10 Gene (Entity type)	ENSG00000166337 - TATA-box binding protein associated factor 10

OGFOD1

Gene (Entity type)

ENSG00000087263 - 2-oxoglutarate and iron dependent oxygenase domain containing 1

MED28

Gene (Entity type)

ENSG00000118579 - mediator complex subunit 28

TMPRSS11E

Gene (Entity type)

ENSG00000087128 - transmembrane serine protease 11E

PPID

Gene (Entity type)

ENSG00000171497 - peptidylprolyl isomerase D

KCTD20

Gene (Entity type)

ENSG00000112078 - potassium channel tetramerization domain containing 20

BUD23

Gene (Entity type)

ENSG00000071462 - BUD23 rRNA methyltransferase and ribosome maturation factor

PSMA3

Gene (Entity type)

ENSG00000100567 - proteasome 20S subunit alpha 3

UBXN7

Gene (Entity type)

ENSG00000163960 - UBX domain protein 7

MOB4

Gene (Entity type)

ENSG00000115540 - MOB family member 4, phocein

TAF10

Gene (Entity type)

ENSG00000166337 - TATA-box binding protein associated factor 10

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.