RNPEP Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with RNPEP Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with RNPEP Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with RNPEP Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with RNPEP Up.

Results found

Linked to

	Label	Description
	ZNF318 Gene (Entity type)	ENSG00000171467 - zinc finger protein 318
	RPA2 Gene (Entity type)	ENSG00000117748 - replication protein A2
	STN1 Gene (Entity type)	ENSG00000107960 - STN1 subunit of CST complex
	UQCRB Gene (Entity type)	ENSG00000156467 - ubiquinol-cytochrome c reductase binding protein
	TFCP2L1 Gene (Entity type)	ENSG00000115112 - transcription factor CP2 like 1
	BICD1 Gene (Entity type)	ENSG00000151746 - BICD cargo adaptor 1
	UBFD1 Gene (Entity type)	ENSG00000103353 - ubiquitin family domain containing 1
	COX4I1 Gene (Entity type)	ENSG00000131143 - cytochrome c oxidase subunit 4I1
	PAPPA Gene (Entity type)	ENSG00000182752 - pappalysin 1
	BBOF1 Gene (Entity type)	ENSG00000119636 - basal body orientation factor 1

ZNF318

Gene (Entity type)

ENSG00000171467 - zinc finger protein 318

RPA2

Gene (Entity type)

ENSG00000117748 - replication protein A2

STN1

Gene (Entity type)

ENSG00000107960 - STN1 subunit of CST complex

UQCRB

Gene (Entity type)

ENSG00000156467 - ubiquinol-cytochrome c reductase binding protein

TFCP2L1

Gene (Entity type)

ENSG00000115112 - transcription factor CP2 like 1

BICD1

Gene (Entity type)

ENSG00000151746 - BICD cargo adaptor 1

UBFD1

Gene (Entity type)

ENSG00000103353 - ubiquitin family domain containing 1

COX4I1

Gene (Entity type)

ENSG00000131143 - cytochrome c oxidase subunit 4I1

PAPPA

Gene (Entity type)

ENSG00000182752 - pappalysin 1

BBOF1

Gene (Entity type)

ENSG00000119636 - basal body orientation factor 1

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.