GSE128255 NDP knockdown stem cell 1 v 2 human dn (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE128255_NDP knockdown_stem cell_1_v_2_human_dn.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE128255_NDP knockdown_stem cell_1_v_2_human_dn.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE128255_NDP knockdown_stem cell_1_v_2_human_dn.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE128255_NDP knockdown_stem cell_1_v_2_human_dn.

Results found

Linked to

	Label	Description
	CPNE3 Gene (Entity type)	ENSG00000085719 - copine 3
	PLCG1 Gene (Entity type)	ENSG00000124181 - phospholipase C gamma 1
	ROCK2 Gene (Entity type)	ENSG00000134318 - Rho associated coiled-coil containing protein kinase 2
	S1PR3 Gene (Entity type)	ENSG00000213694 - sphingosine-1-phosphate receptor 3
	HDAC5 Gene (Entity type)	ENSG00000108840 - histone deacetylase 5
	POLR3K Gene (Entity type)	ENSG00000161980 - RNA polymerase III subunit K
	POLA2 Gene (Entity type)	ENSG00000014138 - DNA polymerase alpha 2, accessory subunit
	DYNLL2 Gene (Entity type)	ENSG00000264364 - dynein light chain LC8-type 2
	THRA Gene (Entity type)	ENSG00000126351 - thyroid hormone receptor alpha
	SMC3 Gene (Entity type)	ENSG00000108055 - structural maintenance of chromosomes 3

CPNE3

Gene (Entity type)

ENSG00000085719 - copine 3

PLCG1

Gene (Entity type)

ENSG00000124181 - phospholipase C gamma 1

ROCK2

Gene (Entity type)

ENSG00000134318 - Rho associated coiled-coil containing protein kinase 2

S1PR3

Gene (Entity type)

ENSG00000213694 - sphingosine-1-phosphate receptor 3

HDAC5

Gene (Entity type)

ENSG00000108840 - histone deacetylase 5

POLR3K

Gene (Entity type)

ENSG00000161980 - RNA polymerase III subunit K

POLA2

Gene (Entity type)

ENSG00000014138 - DNA polymerase alpha 2, accessory subunit

DYNLL2

Gene (Entity type)

ENSG00000264364 - dynein light chain LC8-type 2

THRA

Gene (Entity type)

ENSG00000126351 - thyroid hormone receptor alpha

SMC3

Gene (Entity type)

ENSG00000108055 - structural maintenance of chromosomes 3

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.