SRM Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with SRM Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with SRM Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with SRM Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with SRM Up.

Results found

Linked to

	Label	Description
	PRRX2 Gene (Entity type)	ENSG00000167157 - paired related homeobox 2
	PCBP4 Gene (Entity type)	ENSG00000090097 - poly(rC) binding protein 4
	LSM1 Gene (Entity type)	ENSG00000175324 - LSM1 homolog, mRNA degradation associated
	MISP Gene (Entity type)	ENSG00000099812 - mitotic spindle positioning
	HDAC7 Gene (Entity type)	ENSG00000061273 - histone deacetylase 7
	THBS3 Gene (Entity type)	ENSG00000169231 - thrombospondin 3
	LAMB2 Gene (Entity type)	ENSG00000172037 - laminin subunit beta 2
	ATP6V1F Gene (Entity type)	ENSG00000128524 - ATPase H+ transporting V1 subunit F
	CIDEC Gene (Entity type)	ENSG00000187288 - cell death inducing DFFA like effector c
	BBC3 Gene (Entity type)	ENSG00000105327 - BCL2 binding component 3

PRRX2

Gene (Entity type)

ENSG00000167157 - paired related homeobox 2

PCBP4

Gene (Entity type)

ENSG00000090097 - poly(rC) binding protein 4

LSM1

Gene (Entity type)

ENSG00000175324 - LSM1 homolog, mRNA degradation associated

MISP

Gene (Entity type)

ENSG00000099812 - mitotic spindle positioning

HDAC7

Gene (Entity type)

ENSG00000061273 - histone deacetylase 7

THBS3

Gene (Entity type)

ENSG00000169231 - thrombospondin 3

LAMB2

Gene (Entity type)

ENSG00000172037 - laminin subunit beta 2

ATP6V1F

Gene (Entity type)

ENSG00000128524 - ATPase H+ transporting V1 subunit F

CIDEC

Gene (Entity type)

ENSG00000187288 - cell death inducing DFFA like effector c

BBC3

Gene (Entity type)

ENSG00000105327 - BCL2 binding component 3

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.