C4BPA Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with C4BPA Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with C4BPA Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with C4BPA Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with C4BPA Up.

Results found

Linked to

	Label	Description
	HDAC6 Gene (Entity type)	ENSG00000094631 - histone deacetylase 6
	CPNE3 Gene (Entity type)	ENSG00000085719 - copine 3
	ACADM Gene (Entity type)	ENSG00000117054 - acyl-CoA dehydrogenase medium chain
	PAFAH1B3 Gene (Entity type)	ENSG00000079462 - platelet activating factor acetylhydrolase 1b catalytic subunit 3
	SPCS3 Gene (Entity type)	ENSG00000129128 - signal peptidase complex subunit 3
	ALG5 Gene (Entity type)	ENSG00000120697 - ALG5 dolichyl-phosphate beta-glucosyltransferase
	ETFA Gene (Entity type)	ENSG00000140374 - electron transfer flavoprotein subunit alpha
	DTYMK Gene (Entity type)	ENSG00000168393 - deoxythymidylate kinase
	PSMD6 Gene (Entity type)	ENSG00000163636 - proteasome 26S subunit, non-ATPase 6
	SF3A3 Gene (Entity type)	ENSG00000183431 - splicing factor 3a subunit 3

HDAC6

Gene (Entity type)

ENSG00000094631 - histone deacetylase 6

CPNE3

Gene (Entity type)

ENSG00000085719 - copine 3

ACADM

Gene (Entity type)

ENSG00000117054 - acyl-CoA dehydrogenase medium chain

PAFAH1B3

Gene (Entity type)

ENSG00000079462 - platelet activating factor acetylhydrolase 1b catalytic subunit 3

SPCS3

Gene (Entity type)

ENSG00000129128 - signal peptidase complex subunit 3

ALG5

Gene (Entity type)

ENSG00000120697 - ALG5 dolichyl-phosphate beta-glucosyltransferase

ETFA

Gene (Entity type)

ENSG00000140374 - electron transfer flavoprotein subunit alpha

DTYMK

Gene (Entity type)

ENSG00000168393 - deoxythymidylate kinase

PSMD6

Gene (Entity type)

ENSG00000163636 - proteasome 26S subunit, non-ATPase 6

SF3A3

Gene (Entity type)

ENSG00000183431 - splicing factor 3a subunit 3

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.