GALE Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GALE Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GALE Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GALE Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GALE Up.

Results found

Linked to

	Label	Description
	EMC2 Gene (Entity type)	ENSG00000104412 - ER membrane protein complex subunit 2
	PIK3C2A Gene (Entity type)	ENSG00000011405 - phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
	SMCHD1 Gene (Entity type)	ENSG00000101596 - structural maintenance of chromosomes flexible hinge domain containing 1
	ANKRD17 Gene (Entity type)	ENSG00000132466 - ankyrin repeat domain 17
	CLIP1 Gene (Entity type)	ENSG00000130779 - CAP-Gly domain containing linker protein 1
	MAPK14 Gene (Entity type)	ENSG00000112062 - mitogen-activated protein kinase 14
	UBA6 Gene (Entity type)	ENSG00000033178 - ubiquitin like modifier activating enzyme 6
	SAA4 Gene (Entity type)	ENSG00000148965 - serum amyloid A4, constitutive
	USP34 Gene (Entity type)	ENSG00000115464 - ubiquitin specific peptidase 34
	KTN1 Gene (Entity type)	ENSG00000126777 - kinectin 1

EMC2

Gene (Entity type)

ENSG00000104412 - ER membrane protein complex subunit 2

PIK3C2A

Gene (Entity type)

ENSG00000011405 - phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha

SMCHD1

Gene (Entity type)

ENSG00000101596 - structural maintenance of chromosomes flexible hinge domain containing 1

ANKRD17

Gene (Entity type)

ENSG00000132466 - ankyrin repeat domain 17

CLIP1

Gene (Entity type)

ENSG00000130779 - CAP-Gly domain containing linker protein 1

MAPK14

Gene (Entity type)

ENSG00000112062 - mitogen-activated protein kinase 14

UBA6

Gene (Entity type)

ENSG00000033178 - ubiquitin like modifier activating enzyme 6

SAA4

Gene (Entity type)

ENSG00000148965 - serum amyloid A4, constitutive

USP34

Gene (Entity type)

ENSG00000115464 - ubiquitin specific peptidase 34

KTN1

Gene (Entity type)

ENSG00000126777 - kinectin 1

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.