CERK Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with CERK Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with CERK Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with CERK Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with CERK Up.

Results found

Linked to

	Label	Description
	PPP2CB Gene (Entity type)	ENSG00000104695 - protein phosphatase 2 catalytic subunit beta
	SLC35A3 Gene (Entity type)	ENSG00000117620 - solute carrier family 35 member A3
	WASF3 Gene (Entity type)	ENSG00000132970 - WASP family member 3
	TFAM Gene (Entity type)	ENSG00000108064 - transcription factor A, mitochondrial
	HOXB13 Gene (Entity type)	ENSG00000159184 - homeobox B13
	JAK2 Gene (Entity type)	ENSG00000096968 - Janus kinase 2
	ARL8B Gene (Entity type)	ENSG00000134108 - ARF like GTPase 8B
	PRP4K Gene (Entity type)	ENSG00000112739 - pre-mRNA processing factor kinase PRP4K
	CFAP20 Gene (Entity type)	ENSG00000070761 - cilia and flagella associated protein 20
	PIK3C2A Gene (Entity type)	ENSG00000011405 - phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha

PPP2CB

Gene (Entity type)

ENSG00000104695 - protein phosphatase 2 catalytic subunit beta

SLC35A3

Gene (Entity type)

ENSG00000117620 - solute carrier family 35 member A3

WASF3

Gene (Entity type)

ENSG00000132970 - WASP family member 3

TFAM

Gene (Entity type)

ENSG00000108064 - transcription factor A, mitochondrial

HOXB13

Gene (Entity type)

ENSG00000159184 - homeobox B13

JAK2

Gene (Entity type)

ENSG00000096968 - Janus kinase 2

ARL8B

Gene (Entity type)

ENSG00000134108 - ARF like GTPase 8B

PRP4K

Gene (Entity type)

ENSG00000112739 - pre-mRNA processing factor kinase PRP4K

CFAP20

Gene (Entity type)

ENSG00000070761 - cilia and flagella associated protein 20

PIK3C2A

Gene (Entity type)

ENSG00000011405 - phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.