GSE125956 SYK knockdown 4 v 2 human up (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE125956_SYK knockdown_4_v_2_human_up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE125956_SYK knockdown_4_v_2_human_up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE125956_SYK knockdown_4_v_2_human_up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE125956_SYK knockdown_4_v_2_human_up.

Results found

Linked to

	Label	Description
	PTPN12 Gene (Entity type)	ENSG00000127947 - protein tyrosine phosphatase non-receptor type 12
	HDAC2 Gene (Entity type)	ENSG00000196591 - histone deacetylase 2
	OXSR1 Gene (Entity type)	ENSG00000172939 - oxidative stress responsive kinase 1
	CAT Gene (Entity type)	ENSG00000121691 - catalase
	DAP Gene (Entity type)	ENSG00000112977 - death associated protein
	EIF4E Gene (Entity type)	ENSG00000151247 - eukaryotic translation initiation factor 4E
	ATMIN Gene (Entity type)	ENSG00000166454 - ATM interactor
	PPP2CB Gene (Entity type)	ENSG00000104695 - protein phosphatase 2 catalytic subunit beta
	NRG1 Gene (Entity type)	ENSG00000157168 - neuregulin 1
	PTGR1 Gene (Entity type)	ENSG00000106853 - prostaglandin reductase 1

PTPN12

Gene (Entity type)

ENSG00000127947 - protein tyrosine phosphatase non-receptor type 12

HDAC2

Gene (Entity type)

ENSG00000196591 - histone deacetylase 2

OXSR1

Gene (Entity type)

ENSG00000172939 - oxidative stress responsive kinase 1

CAT

Gene (Entity type)

ENSG00000121691 - catalase

DAP

Gene (Entity type)

ENSG00000112977 - death associated protein

EIF4E

Gene (Entity type)

ENSG00000151247 - eukaryotic translation initiation factor 4E

ATMIN

Gene (Entity type)

ENSG00000166454 - ATM interactor

PPP2CB

Gene (Entity type)

ENSG00000104695 - protein phosphatase 2 catalytic subunit beta

NRG1

Gene (Entity type)

ENSG00000157168 - neuregulin 1

PTGR1

Gene (Entity type)

ENSG00000106853 - prostaglandin reductase 1

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.