GSE139540 menadione 3 v 2 human up (Gene Set)

Dcc Asset:

rummageo chemical perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE139540_menadione_3_v_2_human_up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE139540_menadione_3_v_2_human_up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE139540_menadione_3_v_2_human_up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE139540_menadione_3_v_2_human_up.

Results found

Linked to

	Label	Description
	PVT1 Gene (Entity type)	Pvt1 oncogene
	UCA1 Gene (Entity type)	urothelial cancer associated 1
	LINC-PINT Gene (Entity type)	long intergenic non-protein coding RNA, p53 induced transcript
	C10orf95-AS1 Gene (Entity type)	C10orf95 antisense RNA 1
	FAM86DP Gene (Entity type)	family with sequence similarity 86 member D, pseudogene
	LINC01410 Gene (Entity type)	long intergenic non-protein coding RNA 1410
	CLEC4OP Gene (Entity type)	C-type lectin domain family 4 member O, pseudogene
	PRDM8-AS1 Gene (Entity type)	PRDM8 antisense RNA 1
	TMEM132D-AS1 Gene (Entity type)	TMEM132D antisense RNA 1
	UBBP4 Gene (Entity type)	ubiquitin B pseudogene 4

PVT1

Gene (Entity type)

Pvt1 oncogene

UCA1

Gene (Entity type)

urothelial cancer associated 1

LINC-PINT

Gene (Entity type)

long intergenic non-protein coding RNA, p53 induced transcript

C10orf95-AS1

Gene (Entity type)

C10orf95 antisense RNA 1

FAM86DP

Gene (Entity type)

family with sequence similarity 86 member D, pseudogene

LINC01410

Gene (Entity type)

long intergenic non-protein coding RNA 1410

CLEC4OP

Gene (Entity type)

C-type lectin domain family 4 member O, pseudogene

PRDM8-AS1

Gene (Entity type)

PRDM8 antisense RNA 1

TMEM132D-AS1

Gene (Entity type)

TMEM132D antisense RNA 1

UBBP4

Gene (Entity type)

ubiquitin B pseudogene 4

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.