ME2 Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with ME2 Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with ME2 Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with ME2 Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with ME2 Up.

Results found

Linked to

	Label	Description
	ACADM Gene (Entity type)	ENSG00000117054 - acyl-CoA dehydrogenase medium chain
	KNTC1 Gene (Entity type)	ENSG00000184445 - kinetochore associated 1
	TSPAN9 Gene (Entity type)	ENSG00000011105 - tetraspanin 9
	SNX13 Gene (Entity type)	ENSG00000071189 - sorting nexin 13
	ALPL Gene (Entity type)	ENSG00000162551 - alkaline phosphatase, biomineralization associated
	NUP160 Gene (Entity type)	ENSG00000030066 - nucleoporin 160
	RRP15 Gene (Entity type)	ENSG00000067533 - ribosomal RNA processing 15 homolog
	USP15 Gene (Entity type)	ENSG00000135655 - ubiquitin specific peptidase 15
	HOXB5 Gene (Entity type)	ENSG00000120075 - homeobox B5
	HOXC4 Gene (Entity type)	ENSG00000198353 - homeobox C4

ACADM

Gene (Entity type)

ENSG00000117054 - acyl-CoA dehydrogenase medium chain

KNTC1

Gene (Entity type)

ENSG00000184445 - kinetochore associated 1

TSPAN9

Gene (Entity type)

ENSG00000011105 - tetraspanin 9

SNX13

Gene (Entity type)

ENSG00000071189 - sorting nexin 13

ALPL

Gene (Entity type)

ENSG00000162551 - alkaline phosphatase, biomineralization associated

NUP160

Gene (Entity type)

ENSG00000030066 - nucleoporin 160

RRP15

Gene (Entity type)

ENSG00000067533 - ribosomal RNA processing 15 homolog

USP15

Gene (Entity type)

ENSG00000135655 - ubiquitin specific peptidase 15

HOXB5

Gene (Entity type)

ENSG00000120075 - homeobox B5

HOXC4

Gene (Entity type)

ENSG00000198353 - homeobox C4

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.