GSE139261 PDX SOX10 overexpression G144 2 v 3 human dn (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE139261_PDX_SOX10 overexpression_G144_2_v_3_human_dn.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE139261_PDX_SOX10 overexpression_G144_2_v_3_human_dn.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE139261_PDX_SOX10 overexpression_G144_2_v_3_human_dn.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE139261_PDX_SOX10 overexpression_G144_2_v_3_human_dn.

Results found

Linked to

	Label	Description
	VARS1 Gene (Entity type)	valyl-tRNA synthetase 1
	MIR4435-2HG Gene (Entity type)	MIR4435-2 host gene
	POU3F3 Gene (Entity type)	POU class 3 homeobox 3
	PPP2R3B Gene (Entity type)	protein phosphatase 2 regulatory subunit B''beta
	GTF2IP4 Gene (Entity type)	general transcription factor IIi pseudogene 4
	MRFAP1L2 Gene (Entity type)	Morf4 family associated protein 1 like 2
	LINC00707 Gene (Entity type)	long intergenic non-protein coding RNA 707
	FMC1-LUC7L2 Gene (Entity type)	FMC1-LUC7L2 readthrough
	SMIM48 Gene (Entity type)	small integral membrane protein 48
	RN7SK Gene (Entity type)	RNA component of 7SK nuclear ribonucleoprotein

VARS1

Gene (Entity type)

valyl-tRNA synthetase 1

MIR4435-2HG

Gene (Entity type)

MIR4435-2 host gene

POU3F3

Gene (Entity type)

POU class 3 homeobox 3

PPP2R3B

Gene (Entity type)

protein phosphatase 2 regulatory subunit B''beta

GTF2IP4

Gene (Entity type)

general transcription factor IIi pseudogene 4

MRFAP1L2

Gene (Entity type)

Morf4 family associated protein 1 like 2

LINC00707

Gene (Entity type)

long intergenic non-protein coding RNA 707

FMC1-LUC7L2

Gene (Entity type)

FMC1-LUC7L2 readthrough

SMIM48

Gene (Entity type)

small integral membrane protein 48

RN7SK

Gene (Entity type)

RNA component of 7SK nuclear ribonucleoprotein

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.